leiningen can create an 'uberjar' for you with all your dependencies....
lein uberjar
will create a jar for you in the target subdirectory. The jar will contain all the dependencies listed in your project.clj, so you don't need to worry about constructing a complex classpath to invoke your code.
You can reference this uberjar as a single entry in your java classpath in the normal way or, specify a main-class in the project.clj invoke it as an executable jar. 
e.g. a project.clj like this:
(defproject clj-scratch "1.0.0-SNAPSHOT"
 :description "FIXME: write description"
 :dependencies [[org.clojure/clojure "1.4.0"]                     
 :main clj-scratch.core)
will invoke the -main function in clj-scratch.core namespace
if you run:
java -jar target/clj-scratch-1.0.0-SNAPSHOT-standalone.jar