You will probably have to unjar the native library to the local file system.  As far as I know the bit of code that does the native loading looks at the file system.
This code should help get you started (I haven't looked at it in a while, and it is for a different purpose but should do the trick, and I am pretty busy at the moment, but if you have questions just leave a comment and I'll answer as soon as I can).
import java.io.Closeable;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.io.UnsupportedEncodingException;
import java.net.URI;
import java.net.URISyntaxException;
import java.net.URL;
import java.net.URLDecoder;
import java.security.CodeSource;
import java.security.ProtectionDomain;
import java.util.zip.ZipEntry;
import java.util.zip.ZipException;
import java.util.zip.ZipFile;
public class FileUtils
{
    public static String getFileName(final Class<?>  owner,
                                     final String    name)
        throws URISyntaxException,
               ZipException,
               IOException
    {
        String    fileName;
        final URI uri;
        try
        {
            final String external;
            final String decoded;
            final int    pos;
            uri      = getResourceAsURI(owner.getPackage().getName().replaceAll("\\.", "/") + "/" + name, owner);
            external = uri.toURL().toExternalForm();
            decoded  = external; // URLDecoder.decode(external, "UTF-8");
            pos      = decoded.indexOf(":/");
            fileName = decoded.substring(pos + 1);
        }
        catch(final FileNotFoundException ex)
        {
            fileName = null;
        }
        if(fileName == null || !(new File(fileName).exists()))
        {
            fileName = getFileNameX(owner, name);
        }
        return (fileName);
    }
    private static String getFileNameX(final Class<?> clazz, final String name)
        throws UnsupportedEncodingException
    {
        final URL    url;
        final String fileName;
        url = clazz.getResource(name);
        if(url == null)
        {
            fileName = name;
        }
        else
        {
            final String decoded;
            final int    pos;
            decoded  = URLDecoder.decode(url.toExternalForm(), "UTF-8");
            pos      = decoded.indexOf(":/");
            fileName = decoded.substring(pos + 1);
        }
        return (fileName);
    }
    private static URI getResourceAsURI(final String    resourceName,
                                       final Class<?> clazz)
        throws URISyntaxException,
               ZipException,
               IOException
    {
        final URI uri;
        final URI resourceURI;
        uri         = getJarURI(clazz);
        resourceURI = getFile(uri, resourceName);
        return (resourceURI);
    }
    private static URI getJarURI(final Class<?> clazz)
        throws URISyntaxException
    {
        final ProtectionDomain domain;
        final CodeSource       source;
        final URL              url;
        final URI              uri;
        domain = clazz.getProtectionDomain();
        source = domain.getCodeSource();
        url    = source.getLocation();
        uri    = url.toURI();
        return (uri);
    }
    private static URI getFile(final URI    where,
                               final String fileName)
        throws ZipException,
               IOException
    {
        final File location;
        final URI  fileURI;
        location = new File(where);
        // not in a JAR, just return the path on disk
        if(location.isDirectory())
        {
            fileURI = URI.create(where.toString() + fileName);
        }
        else
        {
            final ZipFile zipFile;
            zipFile = new ZipFile(location);
            try
            {
                fileURI = extract(zipFile, fileName);
            }
            finally
            {
                zipFile.close();
            }
        }
        return (fileURI);
    }
    private static URI extract(final ZipFile zipFile,
                               final String  fileName)
        throws IOException
    {
        final File         tempFile;
        final ZipEntry     entry;
        final InputStream  zipStream;
        OutputStream       fileStream;
        tempFile = File.createTempFile(fileName.replace("/", ""), Long.toString(System.currentTimeMillis()));
        tempFile.deleteOnExit();
        entry    = zipFile.getEntry(fileName);
        if(entry == null)
        {
            throw new FileNotFoundException("cannot find file: " + fileName + " in archive: " + zipFile.getName());
        }
        zipStream  = zipFile.getInputStream(entry);
        fileStream = null;
        try
        {
            final byte[] buf;
            int          i;
            fileStream = new FileOutputStream(tempFile);
            buf        = new byte[1024];
            i          = 0;
            while((i = zipStream.read(buf)) != -1)
            {
                fileStream.write(buf, 0, i);
            }
        }
        finally
        {
            close(zipStream);
            close(fileStream);
        }
        return (tempFile.toURI());
    }
    private static void close(final Closeable stream)
    {
        if(stream != null)
        {
            try
            {
                stream.close();
            }
            catch(final IOException ex)
            {
                ex.printStackTrace();
            }
        }
    }
}