Use the ArrayUtil class as you need. I have written some methods other than removing duplicates. This class is implemented without using any Collection framework classes.
public class ArrayUtils {
/**
 * Removes all duplicate elements from an array. 
 * @param arr Array from which duplicate elements are to be removed.
 * @param removeAllDuplicates true if remove all duplicate values, false otherwise 
 * @return Array of unique elements.
 */
public static int[] removeDuplicate(int[] arr, boolean removeAllDuplicates)         {
    int size = arr.length;
    for (int i = 0; i < size;) {
        boolean flag = false;
        for (int j = i + 1; j < size;) {
            if (arr[i] == arr[j]) {
                flag = true;
                shrinkArray(arr, j, size);
                size--;
            } else
                j++;
        }
        if (flag && removeAllDuplicates) {
            shrinkArray(arr, i, size);
            size--;
        } else
            i++;
    }
    int unique[] = new int[size];
    for (int i = 0; i < size; i++)
        unique[i] = arr[i];
    return unique;
}
/**
 * Removes duplicate elements from an array. 
 * @param arr Array from which duplicate elements are to be removed.
 * @return Array of unique elements.
 */
public static int[] removeDuplicate(int[] arr) {
    return removeDuplicate(arr, false);
}
private static void shrinkArray(int[] arr, int pos, int size) {
    for (int i = pos; i < size - 1; i++) {
        arr[i] = arr[i + 1];
    }
}
/**
 * Displays the array.
 * @param arr The array to be displayed.
 */
public static void displayArray(int arr[]) {
    System.out.println("\n\nThe Array Is:-\n");
    for (int i = 0; i < arr.length; i++) {
        System.out.print(arr[i] + "\t");
    }
}
/**
 * Initializes the array with a given value.
 * @param arr The array to be initialized.
 * @param withValue The value with which the array is to be initialized.
 */
public static void initializeArray(int[] arr, int withValue) {
    for (int i = 0; i < arr.length; i++) {
        arr[i] = withValue;
    }
}
/**
 * Checks whether an element is there in the array. 
 * @param arr The array in which the element is to be found.
 * @param element The element that is to be found.
 * @return True if found false otherwise
 */
public static boolean contains(int arr[], int element) {
    for(int i=0; i< arr.length; i++) {
        if(arr[i] == element)
            return true;
    }
    return false;
}
/**
 * Removes a element from an array.
 * @param arr The array from which the element is to removed.
 * @param element The element to be removed
 * @return The size of the array after removing.
 */
public static int removeElement(int[] arr, int element) {
    int size = arr.length;
    for(int i=0; i< arr.length; i++){
        if(arr[i] == element){
            shrinkArray(arr, i, arr.length);
            size--;
        }
    }
    return size;
}
/**
 * Counts unique elements in an array.
 * @param arr The required array.
 * @return Unique element count.
 */
public static int uniqueElementCount(int arr[]) {
    int count = 0;
    int uniqueCount=0;
    int[] consideredElements = new int[arr.length];
    initializeArray(consideredElements, 0);
    for(int i=0;i<arr.length;i++) {
        int element = arr[i];
        for(int j=i+1;j<arr.length; j++){
            if(element != arr[j] && !contains(consideredElements, element)){
                consideredElements[count++] = element;
            }
        }
    }
    for(int i=0;i< consideredElements.length;i++)
        if(consideredElements[i]!=0)
            uniqueCount++;
    return uniqueCount;
}
}