I have been trying to get rid of all com.sun.org.apache.xml.internal packages in my code replacing them with stable alternatives.
This is one method I've replaced...
import com.sun.org.apache.xml.internal.serialize.LineSeparator;
import com.sun.org.apache.xml.internal.serialize.OutputFormat;
import com.sun.org.apache.xml.internal.serialize.XMLSerializer;
...
...
    /**
     * @param source
     * @param target
     * @throws IOException
     */
    protected static void serialize( Document source, Writer target ) throws IOException
    {
        OutputFormat outputFormat = new OutputFormat( (Document) source );
        outputFormat.setLineSeparator( LineSeparator.Windows );
        // format.setIndenting(true);
        outputFormat.setLineWidth( 0 );
        outputFormat.setPreserveSpace( true );
        XMLSerializer serializer = new XMLSerializer( target, outputFormat );
        serializer.asDOMSerializer();
        serializer.serialize( source );
    } // end serialize
this is an alternative I found...
/**
 * @param source
 * @param target
 * @throws IOException
 * @throws IllegalAccessException 
 * @throws InstantiationException 
 * @throws ClassNotFoundException 
 * @throws ClassCastException 
 */
protected static void serialize( Document source, Writer target ) throws Exception
{
    DOMImplementationRegistry registry = DOMImplementationRegistry.newInstance();
    DOMImplementationLS impl = (DOMImplementationLS) registry.getDOMImplementation( "LS" );
    LSSerializer writer = impl.createLSSerializer();
    target.write( writer.writeToString(source) );
} // end serialize
However, its showing a difference in the xml that is being produced.
It creates
<?xml version="1.0" encoding="UTF-16"?>
How can this be modified to create UTF-8 instead?