I have zero experience in Javascript and JQuery but I have used both in this document.
The first one is to give support to IE for CSS3 transitions and is taken from CSS3 Hover Transition. The code used is
<script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.6.1/jquery.js"></script>
<script type="text/javascript" src="scripts/jquery.hoverTransition.js"></script>
The seond one is for a slideshow gallery and is taken from slideshow gallery and the code is
<script type="text/javascript" src="scripts/jquery-1.3.2.js"></script>
<script type="text/javascript" src="scripts/jquery.galleriffic.js"></script>
<script type="text/javascript" src="scripts/jquery.opacityrollover.js"></script>
As can be seen the former CSS3 Transitions links to jquery 1.6.1 while the later slideshow gallery links to jquery 1.3.2. Do I have to refer to both these files?
I tried removing one link and the other as well but if either of the link is removed, neither the CSS3 Hover Transitions work nor the Slideshow Glaeery work. Alos if I place the above in my head element, they dont work. They only work If I have them at the bottom after the footer and before the body element.
The following is in my head tag. (for the Slideshow Gallery)
<!-- We only want the thunbnails to display when javascript is disabled -->
<script type="text/javascript">
document.write('<style>.noscript { display: none; }</style>');
</script>
And the following is at the bottom. (for the Slideshow Gallery)
    <script type="text/javascript">
        jQuery(document).ready(function($) {
            // We only want these styles applied when javascript is enabled
            $('div.navigation').css({'width' : '300px', 'float' : 'left'});
            $('div.content').css('display', 'block');
            // Initially set opacity on thumbs and add
            // additional styling for hover effect on thumbs
            var onMouseOutOpacity = 0.67;
            $('#thumbs ul.thumbs li').opacityrollover({
                mouseOutOpacity:   onMouseOutOpacity,
                mouseOverOpacity:  1.0,
                fadeSpeed:         'fast',
                exemptionSelector: '.selected'
            });
            // Initialize Advanced Galleriffic Gallery
            var gallery = $('#thumbs').galleriffic({
                delay:                     5500,
                numThumbs:                 15,
                preloadAhead:              10,
                enableTopPager:            true,
                enableBottomPager:         true,
                maxPagesToShow:            7,
                imageContainerSel:         '#slideshow',
                controlsContainerSel:      '#controls',
                captionContainerSel:       '#caption',
                loadingContainerSel:       '#loading',
                renderSSControls:          true,
                renderNavControls:         true,
                playLinkText:              'Play',
                pauseLinkText:             'Pause',
                prevLinkText:              'Previous',
                nextLinkText:              'Next',
                nextPageLinkText:          'Next ›',
                prevPageLinkText:          '‹ Prev',
                enableHistory:             false,
                autoStart:                 true,
                syncTransitions:           true,
                defaultTransitionDuration: 900,
                onSlideChange:             function(prevIndex, nextIndex) {
                    // 'this' refers to the gallery, which is an extension of $('#thumbs')
                    this.find('ul.thumbs').children()
                        .eq(prevIndex).fadeTo('fast', onMouseOutOpacity).end()
                        .eq(nextIndex).fadeTo('fast', 1.0);
                },
                onPageTransitionOut:       function(callback) {
                    this.fadeTo('fast', 0.0, callback);
                },
                onPageTransitionIn:        function() {
                    this.fadeTo('fast', 1.0);
                }
            });
        });
    </script>