using answer from Oliver Gierke above,
working on a project where I need to create multiple collections for one entity, I wanted to use the spring repositories and needed to specify the entity to use before using the repository. 
I managed to modify the repository collection name on demand using this system, it using SPeL. You can only work on 1 collection at a time though.
Domain object
@Document(collection = "#{personRepository.getCollectionName()}")
public class Person{}
Default Spring Repository:
public interface PersonRepository 
     extends MongoRepository<Person, String>, PersonRepositoryCustom{
}
Custom Repository Interface:
public interface PersonRepositoryCustom {
    String getCollectionName();
    void setCollectionName(String collectionName);
}
implementation:
public class PersonRepositoryImpl implements PersonRepositoryCustom {
    private static String collectionName = "Person";
    @Override
    public String getCollectionName() {
        return collectionName;
    }
    @Override
    public void setCollectionName(String collectionName) {
        this.collectionName = collectionName;
    }
}
To use it:
@Autowired
PersonRepository personRepository;
public void testRetrievePeopleFrom2SeparateCollectionsWithSpringRepo(){
        List<Person> people = new ArrayList<>();
        personRepository.setCollectionName("collectionA");
        people.addAll(personRepository.findAll());
        personDocumentRepository.setCollectionName("collectionB");
        people.addAll(personRepository.findAll());
        Assert.assertEquals(4, people.size());
}
Otherwise if you need to use configuration variables, you could maybe use something like this? source
@Value("#{systemProperties['pop3.port'] ?: 25}")