I am not an expert on Ninject but as far as i know, i am only using it to link my DataSource Interface and my EfDb Class to the rest of my application. 
If you need a good book that has a Real Application built around Ninject try:
Pro ASP.NET MVC 3 Framework, Third Edition
or
Pro Asp.Net Mvc 4
There are very few lines of code i am usually concerned with
public class NinjectControllerFactory : DefaultControllerFactory
{
    private IKernel ninjectKernel;
    public NinjectControllerFactory()
    {
        ninjectKernel = new StandardKernel();
        AddBindings();
    }
    protected override IController GetControllerInstance(RequestContext requestContext, Type controllerType)
    {
        return controllerType == null
                   ? null
                   : (IController) ninjectKernel.Get(controllerType);
    }
    private void AddBindings()
    {
        ninjectKernel.Bind<IDataSource>().To<EfDb>();
    }
}
Then register your NinjectControllerFactory in Global.asax.cs with:
ControllerBuilder.Current.SetControllerFactory(new NinjectControllerFactory());
As you can see, this class use Method Injection using private void AddBindings(). This makes it very easy if you are following Test Driven Development (TDD)