I have a menu which uses Jquery to scroll smoothly to anchors I have setup which works great.
Example: http://jsfiddle.net/23VeR/
$(document).ready(function(){
$('a[href^="#"]').bind('click.smoothscroll',function (e) {
    e.preventDefault();
    var target = this.hash,
    $target = $(target);
    $('html, body').stop().animate({
        'scrollTop': $target.offset().top
    }, 500, 'swing', function () {
        window.location.hash = target;
    });
});
});
Hopefully this will help someone else looking for a solution.
I have been searching for a way to highlight (then slowly fade back) the div after the scroll has finished but, can't find a simple solution as I'm a complete jquery noob.