I am currently experimenting with xdotool to send keys to a process (I understand that it may not work for all processes that does not set _NET_WM_PID). I have trouble sending keystrokes to windows other from the focus. It does work if you are sending keystrokes to the CURRENTWINDOW. Below is the snippet that I used to test xdotool's functionality.
extern "C"{
  #include <xdo.h>
}
//extern "C" xdo_window_search
#include <iostream>
#include <string.h>
using namespace std;
int main(){
    xdo_t* p_xdo = xdo_new(NULL);
    // Allocate memory for search query.
    xdo_search_t s;
    // Clear the allocated memory.
    memset(&s, 0, sizeof(xdo_search_t));
    // Set the search query.
    s.pid = 1916;
    s.max_depth = -1;
    s.searchmask = SEARCH_PID;
    s.require = xdo_search::SEARCH_ANY;
    // Allocate memory for output
    Window* windows;
    int no_windows;
    xdo_window_search(p_xdo,&s,&windows,&no_windows);
    cout << no_windows << endl;
    // Prints all windows' names with matching criteria
    for( int i=0;i<no_windows;i++ ){
        unsigned char * name;
        int size;
        int type;
        xdo_get_window_name(p_xdo,windows[i],&name,&size,&type);
        cout << i << ":" << name << endl;
    }
    for( int i=0;i<no_windows;i++ ){
        xdo_type(p_xdo,windows[i],"Hello World",0);
    }
    //xdo_type(p_xdo,CURRENTWINDOW,"Hello World",0); // This does work.
    return 0;
}
In additional to testing xdotool's functionality, I've looked into xdotool's source code. Interestingly, I found that they are using Xtest to send keystrokes to the focused window (CURRENTWINDOW) and X11's XSendEvent for other windows. I turned to xdotool because I couldn't get XSendEvent to work and Xtest cannot send keys to any other windows than the focused window.
Am I not using the xdotool correctly? Does xdotool not work with all *nix OS with X11?
[I am running this on Ubuntu 13.04.]
EDIT
So, it looks like that does work but not for all windows that it finds. For example, it works for firefox but not gedit and gnome-terminal although it found gedit and gnome-terminal by its pid. It behaves differently if I used CURRENTWINDOW.
So, it would be great if someone can explain why is this so. Like, is it related the force send flag in an XEvent?