If your question is to register a file type (the file extension to be exact), you may use this.
I use it successfully in my application installer.
    /// <summary>
    /// Registers a file type. This enables users to open a file via double-clicking in the windows explorer. 
    /// ATTENTION: Providing a wrong extension or fileType will certainly cause a malfunction of other file types!!!
    /// </summary>
    /// <param name="extension"> The file extension (this may contain a starting '.') </param>
    /// <param name="fileType"> Name of the file type. </param>
    /// <param name="fileDescription"> Descriptive text for the file type. Displayed in the windows explorer. </param>
    /// <param name="verb"> Verb to use, usually 'open' </param>
    /// <param name="commandLine"> Commandline for the 'open' verb. Example: "C:\Zeiss\CmmCtrl\bin\ScriptTool.exe %1". You may use quotes ("") if any argument contains whitespaces. Don't forget to use a %1, which is replaced  </param>
    public static void RegisterFileType(string extension, string fileType, string fileDescription, string verb, string commandLine) {
        RegisterFileType(extension, fileType, fileDescription, verb, commandLine, "", -1);
    }
    /// <summary>
    /// Registers a file type. This enables users to open a file via double-clicking in the windows explorer. 
    /// ATTENTION: Providing a wrong extension or fileType will certainly cause a malfunction of other file types!!!
    /// </summary>
    /// <param name="extension"> The file extension (this may contain a starting '.') </param>
    /// <param name="fileType"> Name of the file type. </param>
    /// <param name="fileDescription"> Descriptive text for the file type. Displayed in the windows explorer. </param>
    /// <param name="verb"> Verb to use, usually 'open' </param>
    /// <param name="programPath"> Full path to the program to open the file. You may use quotes ("") if any argument contains whitespaces. Example: "C:\Zeiss\CmmCtrl\bin\ScriptTool.exe" </param>
    /// <param name="arguments"> Commandline for the 'open' verb. Don't forget to use a "%1". You may use quotes ("") if any argument contains whitespaces. Example: "%1"</param>
    /// <param name="iconIndex"> Index of the icon within the executable. Use -1 if not used. </param>
    public static void RegisterFileType(string extension, string fileType, string fileDescription, string verb, string programPath, string arguments, int iconIndex) {
        if (!extension.StartsWith(".")) extension = "." + extension;
        RegistryKey key;
        string commandLine = programPath + " " + arguments;
        // 1) Extension
        //    HKEY_CLASSES_ROOT\.zzz=zzzFile
        key = Registry.ClassesRoot.CreateSubKey(extension);
        key.SetValue("", fileType);
        key.Flush();
        // 2) File type
        //    HKEY_CLASSES_ROOT\zzzFile=ZZZ File
        key = Registry.ClassesRoot.CreateSubKey(fileType);
        key.SetValue("", fileDescription);
        key.Flush();
        // 3) Action (verb)
        //    HKEY_CLASSES_ROOT\zzzFile\shell\open\command=Notepad.exe %1
        //    HKEY_CLASSES_ROOT\zzzFile\shell\print\command=Notepad.exe /P %1
        key = Registry.ClassesRoot.CreateSubKey(fileType + "\\shell\\" + verb + "\\command");
        key.SetValue("", commandLine);
        key.Flush();
        // 4) Icon
        if (iconIndex >= 0) {
            key = Registry.ClassesRoot.CreateSubKey(fileType + "\\DefaultIcon");
            key.SetValue("", programPath + "," + iconIndex.ToString());
            key.Flush();
        }
        // 5) Notify running applications
        SHChangeNotify(SHChangeNotifyEventID.SHCNE_ASSOCCHANGED, SHChangeNotifyFlags.SHCNF_IDLIST, IntPtr.Zero, IntPtr.Zero);
    }
    /// <summary> Notifies the system of an event that an application has performed. An application should use this function if it performs an action that may affect the Shell. </summary>
    [DllImport("shell32.dll", CharSet = CharSet.Auto, SetLastError = true)]
    public static extern void SHChangeNotify(SHChangeNotifyEventID wEventId, SHChangeNotifyFlags uFlags, IntPtr dwItem1, IntPtr dwItem2);
Use "open" for verb.
When providing a file name as argument, use "\"%1\" for arguments.