Not really a question... Just wanted to post this somewhere because I couldnt find it elsewhere. Now that I've cobbled together a working demo I thought i would share. This works equally well on Coldfusion and Railo CFML servers.
The problem is that for CFML developers is that CFFILE doesn't work with <input type="file" multiple> ... traditionally if you wanted to upload 3 files and use CFFILE on the back end you would have to include 3 separate file inputs on your calling page. 
Here is my solution shaved down for simplicity. It uses Jquery $.ajax to make several calls to CFFILE and returns the results to a div on the calling page. Im sure there is a better way to do this and my code is probably a complete hack but the below example works. Hope this helps someone.
multiFileUpload.cfm
<!DOCTYPE html>
<CFPARAM Name="URL.contractID" defualt="">
<head>
<title>Multi File Upload</title>
<script>
$( document ).ready(function() {
       $('#submitFrm').on("click", function(e){
        e.preventDefault();
            //The jquery.each() statement loops through all the files selected by user
    $.each($('#multiFile')[0].files, function(i, file) {
           var data = new FormData(); 
               data.append('file-0', file);
           ajaxUpload(data);
            }); //end .each statement       
        }); //end submitFrm's click function 
        function ajaxUpload(data){
        console.log("ajaxUpload function called");
        $.ajax({url: "multiFileUploadAction.cfm",
        data: data,
        cache: false,
        contentType: false, //this is need for this to work with coldfusion
        processData: false, //this is need for this to work with coldfusion
        type: 'POST',
        success: function(returnData){
             console.log(returnData);
                             //here is where you would update your calling
                             //page if successfull 
                             $("#msgDiv").html($("#msgDiv").html() + "<p>" + returnData + "</p>");
             },
        error: function(returnData){
               console.log(returnData);
               }
    }); //end .ajax call
    } //end ajaxUpload function
}); //end onDocument ready
</script>
<style>
</style>
</head>
<body>
<form action="multiFileUploadAction.cfm" Method="POST" enctype="multipart/form-data" class="well" id="multiFileFrm">
 <input type="file" name="multiFile" id="multiFile" multiple />
 <button class="btn btn-primary" id="submitFrm" >Submit</button>
 <cfoutput>
     <input type="hidden" Name="contractID" id="contractID" value="#URL.contractID#">  
 </cfoutput>
</form>
<div id="msgDiv" style="display:none;"></div>
</body>
</html>
This is my proccessing page... again stripped down to the bare minimum: multiFileUploadAction.cfm
<CFOUTPUT>
<CFTRY>
<cffile action="upload" 
            filefield="file-0" 
            destination="#expandpath("\images")#" 
            nameConflict="makeUnique">
    <cfcatch>
    #cfcatch.Message#
</cfcatch>
</cftry>
    <cfcontent reset="true" />Uploaded #cffile.serverFile#
</CFOUTPUT>
<!---
<cfdump var="#form#">
--->
Thats it... in my production code i create a JSON response that includes the saved file name and path to the file (because of the 'makeUnique' it could be different then what was sent) I also process the file to create a thumbnail and send it's name and path back to the calling page. That way on the calling page I can display a thumbnail. Hope someone finds this helpful.