I want to knit AND latexmk Knitr documents using one AUCtex command. I don't know how to code in lisp, and web search didn't turn up anything like this.
I have something close. The extension of the file needs to be changed for latexmk. Any help will be appreciated.
Following line is for my .emacs file.
(add-hook 'LaTeX-mode-hook (lambda () (push '
  ("KnitrLaTeX" "Rscript -e \"library(knitr)\; knit('%s')\" && latexmk -pdf %s" 
   TeX-run-TeX nil t :help "Run knitr and latexmk on file") 
   TeX-command-list)))
When I run C-c C-c (KnitrLaTeX), emacs runs the following command: 
Running `KnitrLaTeX' on `slides.Rnw' with ``Rscript -e "library(knitr); knit('slides.Rnw')" && latexmk -pdf slides.Rnw''
Which is wrong. It should read "... && latexmk -pdf slides.tex"
Thanks in advance.