I should like to provide the modern answer. The other answers were fine when this question was asked, but time moves on. Today I recommend you use java.time, the modern Java date and time API.
    ZonedDateTime aDateTime = ZonedDateTime.of(2017, 12, 8, 19, 25, 48, 991000000, ZoneId.of("Europe/Sarajevo"));
    ZonedDateTime otherDateTime = ZonedDateTime.of(2017, 12, 8, 20, 10, 38, 238000000, ZoneId.of("Europe/Sarajevo"));
    long diff = ChronoUnit.SECONDS.between(aDateTime, otherDateTime);
    System.out.println("Difference: " + diff + " seconds");
This prints:
Difference: 2689 seconds
ChronoUnit.SECONDS.between() works with two ZonedDateTime objects or two OffsetDateTimes, two LocalDateTimes, etc.
If you need anything else than just the seconds, you should consider using the Duration class:
    Duration dur = Duration.between(aDateTime, otherDateTime);
    System.out.println("Duration: " + dur);
    System.out.println("Difference: " + dur.getSeconds() + " seconds");
This prints:
Duration: PT44M49.247S
Difference: 2689 seconds
The former of the two lines prints the duration in ISO 8601 format, the output means a duration of 44 minutes and 49.247 seconds.
Why java.time?
The Date class used in several of the other answers is now long outdated. Joda-Time also used in a couple (and possibly in the question) is now in maintenance mode, no major enhancements are planned, and the developers officially recommend migrating to java.time, also known as JSR-310.
Question: Can I use the modern API with my Java version?
If using at least Java 6, you can.