Assuming you're talking about passing php variables to Javascript, you can do this when writing to the page, ex:
<?php
$passThis = 'Passing'
?>
<script language="javascript" type="text/javascript">
    var sStr = "My name is <?php echo $passThis ?>.";
    document.write(sStr);
</script>
You could also get integer values, doing something like
$integerValue = 5;
var int = "<?php echo $integerValue; ?>";
int = parseInt(int);
By modifying this, you could use it to pass more types of variables, so assuming you have something like this:
<?php
    $text = 'someText';
?>
<script>
        $(function() {
            $('#myButton').confirmOn('click', function(e, confirmed){
                if(confirmed) {
                    //Here I'll use the variable
                }
            })
        });
</script>
you could do
<script>
        $(function() {
            $('#myButton').confirmOn('click', function(e, confirmed){
                if(confirmed) {
                    console.log("<?php echo $text ?>");
                }
            })
        });
</script>
to make Javascript alert 'someText'.