I tried many option to fix the z-index issue of PDF iFrame overlapping jQuery Dialog box, but still its not working.
similar to "Iframe issue when i open pdf dialog box goes behind pdf" issue, I am having the same issue in IE, here is the screenshot of my issue:

Below is the jQuery code of which generates the dialog box:-
           $("#cancelSessionButton").click(function () {
                $("#sessionReason").dialog("open");
                $("#pdf").hide();
            });
            $("#sessionReason").dialog({
                autoOpen: false,
                modal: true,
                buttons: {
                    "Submit": function () {
                        .......
                    },
                    "Cancel": function () {
                        $(this).dialog("close");
                        $("#pdf").show();
                    }
                }
            });
            $("#cancelSessionButton").click(function () {
                $("#sessionReason").dialog("open");
                $("#pdf").hide();
            });
Here is the HTML from which the iFrame is generating:
          <div id="pdf">
            <iframe id="pdfIframe" name="pdfIframe" src="pdf.html" style="width: 100%; height: 100%;" scrolling="auto" frameborder="1">
                 Your browser doesn't support inline frames.
            </iframe>
        </div>
PDF.html code:
<body>
    <object data="lorem.pdf" type="application/pdf">
        <p>It appears you don't have Adobe Reader or PDF support in this web browser.
            <br/>
            <a href="lorem.pdf">Click here to download the PDF</a> OR <a href="http://get.adobe.com/reader/" target="_blank">Click here to install Adobe Reader</a></p>
        <embed id="pdfDocument" src="lorem.pdf" type="application/pdf" />
   </object>
</body>
let me know if you need any other information.
Please suggest!!