if innodb_file_per_table is enabled then the tables can be restored via this and this.
MyISAM
For a MyISAM table mydb.mytable, you should have three files
- \bin\mysql\mysql5.6.12\data\mydb\mytable.frm
- \bin\mysql\mysql5.6.12\data\mydb\mytable.MYD
- \bin\mysql\mysql5.6.12\data\mydb\mytable.MYI
They should already be accessible as a table since each file contains needed data, metadata, and index info. Collectively, they form the table. There are no external storage engine mecahnisms to access.
InnoDB
Take a look at this Pictorial Representation of InnoDB
InnoDB Architecture
The only thing that attaches ibdata1 to the .ibd files is the data dictionary.
Your mission, should you decide to accept it, is to create each table and swap in the .ibd
Before you do anything, make a full copy of "\bin\mysql\mysql5.6.12\data" to another 
Here is a sample
Suppose you have a database mydb with the table mytable. This means
- You have the folder \bin\mysql\mysql5.6.12\data\mydb
- Inside that folder, you have
You need the .frm. If you look at my post https://dba.stackexchange.com/questions/44314/how-can-extract-the-table-schema-from-just-the-frm-file/44316#44316, you can download a MySQL utility that can generate the SQL needed to create the table.
You should now do the following
- Move mytable.ibdto\bin\mysql\mysql5.6.12\data
- Run the SQL to create the InnoDB table
- Login to mysql and run ALTER TABLE mydb.mytable DISCARD TABLESPACE;(This will delete\bin\mysql\mysql5.6.12\data\mydb\mytable.ibd)
- Copy \bin\mysql\mysql5.6.12\data\mytable.ibdinto\bin\mysql\mysql5.6.12\data\mydb
- Login to mysql and run ALTER TABLE mydb.mytable IMPORT TABLESPACE;(This will register\bin\mysql\mysql5.6.12\data\mydb\mytable.ibdinto the data dictionary)
After this, the table mydb.mytable should be fully accessible. You can test that accessibility by simply running:
SELECT * FROM mydb.mytable LIMIT 10;
Give it a Try !!!
DRINK (Data Recovery Incorporates Necessary Knowledge) Responsibly
Not as part of MySQL, but tools like Percona Xtrabackup makes the process a bit faster for exporting/backing up the tables, allowing things like using regular expressions or lists for filtering:
For importing a list of tables, you can use some automation oneliners like this one found on Bill Karwin tools:
mysqldump --no-data $schema > schema-ddl.sql
mysql -N -B <<'EOF' > discard-ddl.sql
SELECT CONCAT('ALTER TABLE `', table_name, '` DISCARD TABLESPACE;') AS _ddl
FROM INFORMATION_SCHEMA.TABLES WHERE TABLE_SCHEMA='$schema' AND ENGINE='InnoDB';
EOF
mysql -N -B <<'EOF' > import-ddl.sql
SELECT CONCAT('ALTER TABLE `', table_name, '` IMPORT TABLESPACE;') AS _ddl
FROM INFORMATION_SCHEMA.TABLES WHERE TABLE_SCHEMA='$schema' AND ENGINE='InnoDB';
EOF
Basically, you can use the information_schema.tables table for listing the tables you want using "dynamic sql". For example, change $schema above for the desired database name.