Avoid modifying the DOM in the controllers.  
edit: but to answer your question, ng-focus was me being lazy.
I would create a directive
angular.module('focus-me', []).
  .directive('focusMe', function(){ 
    return {
      scope: { watch_this: '=' },
      link: function(scope, element, attrs){ 
              scope.$watch('watch_this', function(){
                 $(element).focus();
              }
            }
    }                  
});
this gives you two options
input type='text' focus-me='comment.text' ng-model='comment.text' ng-change='userList(comment.text)'
or
input type='text' focus-me='some_obj_attr_you_toggle' ng-model='comment.text' ng-change='userList(comment.text)'
1st will call the watcher function more times than necessary, when you are typing as well (not really a big deal).
2nd will only call the watcher function when you toggle the attr in your addUserTo function.
A simpler way (although you are modifying the dom in the controller) would be:
$scope.addUserToComment = function(user, $event) {
  $($event.target).find('css selector to navigate to textbox').focus();
  $scope.comment.text += user + " ";
  $scope.usersShow = false;
}; 
in your ng-click add another parameter
ng-click='addUserToComment(user, $event)'
PS. Code might not be 100% correct but you get the idea.