You might want to try something like this. 
It's basicall a ReplacementSpan that takes the text it's applied on, separates it into two parts, and draws them on the canvas. The size factor and y translation are somewhat hand-picked. I hope it's useful (or at least that you or someone else can build on it).
public class SuperSubSpan extends ReplacementSpan
{
    @Override
    public int getSize(Paint paint, CharSequence text, int start, int end, FontMetricsInt fm)
    {
        text = text.subSequence(start, end);
        String[] parts = text.toString().split(",");
        Paint p = getSuperSubPaint(paint);
        return (int) Math.max(p.measureText(parts[0]), p.measureText(parts[1]));
    }
    private static TextPaint getSuperSubPaint(Paint src)
    {
        TextPaint paint = new TextPaint(src);
        paint.setTextSize(src.getTextSize() / 2.5f);
        return paint;
    }
    @Override
    public void draw(Canvas canvas, CharSequence text, int start, int end, float x, int top, int y, int bottom, Paint paint)
    {
        text = text.subSequence(start, end);
        String[] parts = text.toString().split(",");
        Paint p = getSuperSubPaint(paint);
        float width1 = p.measureText(parts[0]);
        float width2 = p.measureText(parts[1]);
        float maxWidth = Math.max(width1, width2);
        canvas.drawText(parts[0], x + (maxWidth - width1), y - (bottom - top) / 3f, p);
        canvas.drawText(parts[1], x + (maxWidth - width2), y + (bottom - top) / 10f, p);
    }
}
Then use it as:
Spannable str = new SpannableString("9,4Be -> 2000,127Jo");
str.setSpan(new SuperSubSpan(), 0, 3, Spannable.SPAN_EXCLUSIVE_EXCLUSIVE);
str.setSpan(new SuperSubSpan(), 9, 17, Spannable.SPAN_EXCLUSIVE_EXCLUSIVE);
mTextView.setText(str);
which produces the following result:

A slightly better solution would be to have a special format for these strings (e.g. "{9,4}Be -> {2000,127}Jo") and have a regular expression process the string and add the corresponding SuperSubSpans, just so that you don't need to this manually. But the actual Span part would be more or less the same.