I have changed the asp Identity so that in database Id column of AspNetIdentity table be UserId:
modelBuilder.Entity<ApplicationUser>()
.Property(p => p.Id)
.HasColumnName("UserId");
And that works fine. Generated table have UserId instead Id.
Now I have another table that should be mapped with AspNetUsers by UserId:
When write it this way:
public class JobApply
{ ...
public int UserId { get; set; }
public virtual ApplicationUser ApplicationUser { get; set; }
Table in database looks like:

And if I write it like this:
public class JobApply
{ ...
public int ApplicationUserId { get; set; }
public virtual ApplicationUser ApplicationUser { get; set; }
database looks like:

First option created UserId field but it is not FK instead of that new field is added as FK.
How can I properly map this to have table JobApply with field UserId to be FK to AspNetUsers?
UPDATE
When I add this:
base.OnModelCreating(modelBuilder);
modelBuilder.Entity<ApplicationUser>()
.Property(p => p.Id)
.HasColumnName("UserId");
modelBuilder.Entity<JobApply>()
.HasRequired(e => e.ApplicationUser)
.WithMany()
.HasForeignKey(e => e.UserId);
Tables relation looks like this:

This is both classes:
public class ApplicationUser : IdentityUser<int, ApplicationUserLogin, ApplicationUserRole, ApplicationUserClaim>
{
public string Email { get; set; }
public string ConfirmationToken { get; set; }
public bool IsConfirmed { get; set; }
public string PasswordResetToken { get; set; }
public int CityId { get; set; }
public virtual City City { get; set; }
public virtual ICollection<JobApply> JobApplies { get; set; }
}
public class JobApply
{
public int JobApplyId { get; set; }
public int UserId { get; set; }
public int JobId { get; set; }
public int JobApplyStatusId { get; set; }
public DateTime CreatedDate { get; set; }
public virtual ApplicationUser ApplicationUser { get; set; }
public virtual Job Job { get; set; }
public virtual JobApplyStatus JobApplyStatus { get; set; }
}