Your Interface method can use native SQL to select columns from multiple tables and the method will return a list of object arrays :
public interface MyRepository extends JpaRepository {
  @Query(name = [name], nativeQuery = true)
  List<Object[]> methodThatQueriesMultipleTables();
}
Each item in the list is Object array that is a row of data
You can also create a Custom Repository Implementation :
How to add custom method to Spring Data JPA
@NoRepositoryBean
public interface CustomRepository<[Your object]> {
    List<Object[]> methodThatQueriesMultipleTables();
}
public class MyRepositoryImpl<[Your object]> implements CustomRepository<[Your object] {
    @PersistenceContext
    private EntityManager entityManager;
    @Override
    public List<Object[]> methodThatQueriesMultipleTables() {
        //use JPA query to select columns from different tables
        Query nativeQuery = entityManager.createNativeQuery("query");
        return query.getResultList();
    }
}