type run.bat
 @echo off
 cd C:\Users\aaa\bbb\ccc\dd
 rem this will show all files in dir 
 rem is the file you're expecting listed?
 dir 
 rem notice how you can make comments with a leading rem(ark)
 @echo starting scripts\all.suite
 rem you have to change this to have the full path using Windows X:\dir\dir conventions
 c:\home\Scripts\all.suite website-address
 @echo done running scripts\all.suite website-address
 @echo shutting down
 net stop schedule
So its still not clear exactly to me your goal. The reason I added the cd c:\... command is that will **C**hange **D**irectory to the path specified.
This is what you need so you can "run a task from a desired directory instead of System32".
Copy everything from the first @echo off to the last net stop and using notepad, paste it into a file, fix command names and paths website-urls, etc, then save that file to c:\temp\testrunner.bat.
Open a cmd.exe window and test that the script works. Just paste c:\temp\testrunner.bat on to cmd-line and hit enter. If that works, then made an entry in the scheduler to run c:\temp\testrunner.bat . I don't know the specifics of running a script for scheduler, so look for clues on the input screen. Is the an option to run 'now'? 
If the .bat file doesn't work from the command-line, then you have to fix the file before you try running it in the scheduler.  As your command Scripts/all.suite website-address is a little vague, you'll do better to post a new question asking for help to fix the .bat file and use a sample command that people will be able to use on their PCs at home.
IHTH.