Literals are literals and different representations of the same literal are... literally identical.
However, expressions (literal or not) also have a type. 
The equivalent literal would have been 2654435769u (note the type suffix making it unsigned).
Look at this simple test  Live On Coliru
- 0x9e3779b9has type- unsigned int(32 bit) and
- 2654435769has type- long(64 bit)
- 2654435769uhas type- unsigned int(32 bit) again
As you can see, the hex representation favours unsigned and the decimal representation favours signed, making the type bigger¹.
¹ native integer sizes are implementation defined
(Beyond types, one could argue that maybe, perhaps, bit-distribution is slightly more apparent in hex, octal or ultimately binary representations)