I have problem encrypting files with SJCL and javascript.
I have managed to encrypt text-files with using FileReader API and readAsBinaryString. When it comes to encrypting pdf/png/.. then problem arrises probably due to encoding.
I found that I can use readAsArrayBuffer which suits this task perfectly, so I basically read file and create new typed array with new Uint8Array() but i dont know how exactly I am supposed to encrypt such a data. 
Here's my code:
/** Convert from an array of bytes to a bitArray. */
function toBitArrayCodec(bytes) {
    var out = [], i, tmp=0;
    for (i=0; i<bytes.length; i++) {
        tmp = tmp << 8 | bytes[i];
        if ((i&3) === 3) {
            out.push(tmp);
            tmp = 0;
        }
    }
    if (i&3) {
        out.push(sjcl.bitArray.partial(8*(i&3), tmp));
    }
    return out;
}
/** Convert from a bitArray to an array of bytes. */
function fromBitArrayCodec(arr) {
    var out = [], bl = sjcl.bitArray.bitLength(arr), i, tmp;
    for (i=0; i<bl/8; i++) {
        if ((i&3) === 0) {
            tmp = arr[i/4];
        }
        out.push(tmp >>> 24);
        tmp <<= 8;
    }
    return out;
}
var reader = new FileReader();
    reader.readAsArrayBuffer(fileData); //filedata comes from function
    reader.onload = function() {
        var bytes = new Uint8Array(reader.result);
        var bits = toBitArrayCodec(bytes);
        var crypt = sjcl.encrypt("aaaaa", bits);
        var decrypt = sjcl.decrypt("aaaaa", crypt);
        var byteNumbers = fromBitArrayCodec(decrypt);
        var byteArray = new Uint8Array(byteNumbers);
        saveData(byteArray, 'png.png');
I am getting error on
Uncaught URIError: URI malformed sjcl.js:12sjcl.codec.utf8String.fromBits sjcl.js:12sjcl.json.decrypt sjcl.js:44reader.onload
I need to know how to encrypt uint8array or another alternative how to encrypt(pdf/png/..) files.