You have created TableRow and CheckBox you should set id pragmatically like this
public void addNewItem(String item, TableLayout tablel) {
TableRow row = new TableRow(this);
row.setId(i);//i is a positive int value
TableRow.LayoutParams params = new TableRow.LayoutParams(TableRow.LayoutParams.WRAP_CONTENT);
row.setLayoutParams(params);
CheckBox item1 = new CheckBox(this);
row.setId(j);//j is a positive int value
item1.setText(item);
row.addView(item1);
tablel.addView(row, i);
i++;
You can check this SO question
int chkBoxId = 10;
int tableRowId = 100;
String texts[] = {"Text1", "Text2", "Text3", "Text4", "Text5"};
CheckBox[] chkBoxes;
private TableLayout tableLayout;
@Override
protected void onCreate(Bundle savedInstanceState) {
    // TODO Auto-generated method stub
    super.onCreate(savedInstanceState);
    setContentView(R.layout.activity_dynamic_chk_box);
    tableLayout = (TableLayout) findViewById(R.id.tableLayout);
    chkBoxes = new CheckBox[texts.length];
    for(int i = 0; i < 5; i++) {
        TableRow row = new TableRow(this);
        TableRow.LayoutParams params = new TableRow.LayoutParams(TableRow.LayoutParams.WRAP_CONTENT);
        row.setLayoutParams(params);
        chkBoxes[i] = new CheckBox(this);
        chkBoxes[i].setId(chkBoxId++);
        row.setId(tableRowId);//tableRowId is a positive int value
        chkBoxes[i].setText(texts[i]);
        row.addView(chkBoxes[i]);
        tableLayout.addView(row, i);
        tableRowId++;
    }
    for (int i = 0; i < texts.length; i++) {
        final int j = i;
        chkBoxes[j].setOnCheckedChangeListener(new OnCheckedChangeListener() {
        @Override
        public void onCheckedChanged(CompoundButton buttonView, boolean isChecked) {
            // TODO Auto-generated method stub
            if(isChecked) {
                int checkedId = chkBoxes[j].getId();
                Toast.makeText(DynamicCheckBoxActivity.this, 
                        String.valueOf(checkedId), 
                        Toast.LENGTH_SHORT).show();
            } else {
                int unCheckedId = chkBoxes[j].getId();
                System.out.println("Uncheck ===> " + String.valueOf(unCheckedId));
            }
          }
      });
    }
}