In my case, I'm using spring-boot with gradle and added flyway by simply putting compile   'org.flywaydb:flyway-core' to the build.gradle. 
For a simulator run, which is in test, I would like to clear the database before each run. I've put a reset script in /src/test/resources/db/migration/V1.0__Reset.sql (with the real init sql-script at /src/main/resources/db/migration/V1.1__Init.sql), but receive a SyntaxException due to the reset script, which doesn't occur when I run it from the MySQL Workbench. 
How can I reset or clear the database at startup?
-- UPDATE --
I've tried to use a Spring DataSourceInitializer, but it seems Flyway scripts are executed before the DS init, so it results in Hibernate Syntax error because the tables aren't found.
@Resource
DataSource ds;
@Bean
public DataSourceInitializer dbInit() throws FileNotFoundException, URISyntaxException {
        public DataSourceInitializer dbInit() throws FileNotFoundException, URISyntaxException {
        DataSourceInitializer re = new DataSourceInitializer();
        re.setDataSource(ds);
        re.setEnabled(true);
        String str = "classpath:sql/V1.0__Reset.sql";
        URL url = ResourceUtils.getURL(str);
        org.springframework.core.io.Resource resi = new PathResource(url.toURI());
        // new org.springframework.core.io.ClassPathResource(str)
        re.setDatabasePopulator(new ResourceDatabasePopulator(resi));
        return re;
    }
 
     
     
    