There is no need to change the cx and cy attributes of circle since it is already within the node group. Just need to transform the node group elements. Also note that position of links should be updated after nodes since position of links is calculated from node positions.
Try replacing your tick function as shown below.
function tick(d) {
node.attr("transform", function(d) {
var radius = d.children ? 22 : isNaN(parseInt(d.name)) ? 16 : 10;
d.x = Math.max(radius, Math.min(w - radius, d.x));
d.y = Math.max(radius, Math.min(sh - radius, d.y));
return "translate(" + d.x + "," + d.y + ")";
});
link.attr("x1", function(d) {
return d.source.x;
})
.attr("y1", function(d) {
return d.source.y;
})
.attr("x2", function(d) {
return d.target.x;
})
.attr("y2", function(d) {
return d.target.y;
});
}
Here is the working JSFiddle