Let’s say my domain is example.com. On www.example.com, I had set up my main website (set up with Blogger) and used go.example.com for URL shortening (setup with GoDaddy Shortened Service). Now, I want to block all go.example.com URLs so that they can't be indexed.
If I use rel="noindex,nofollow" for go.example.com URLs in my main blog, then, does this affect my blog search engine optimization?