If you only want to match 3 digits then
/\d{3}/gm
is all you need. But I think you require something like:
/^C\.O\..*?(\d{3})/gm
or
/^C\.O\..*?:\s*(\d{3})/gm
You can play and tinker with the above regexes here and here.
As it turns out quelquecosa left out one-or-two "minor details".
The regex should probably be something like:
/^\|\s+C\.O\.\s+:\s+(\d{3})/gm
Example here.
This matches 009 and 011 in the below text, but not Total C.O. ....
+---------------------------------------------------------------------------------------------------------------------------------------+
| UNO - VER 8.5.                                                                         HORA  :    5:56 PM |
|                                                                                                                    PAGINA:         14 |
|                                                                                                                                       |
| Empresa         : MA                                                                                                  |
| C.O.            : 009 PALMIRA2 OUTLET                                                 Fecha Inicial : 2016/04/16  Hora Inicial:       |
| Tipo Inventario : 6   ETIQUETAS Y BOLSAS                                              Fecha Final   : 2016/04/16  Hora Final  :       |
+---------------------------------------------------------------------------------------------------------------------------------------+
|GRUPO              DESCRIPCION                           U.M.      CANTIDAD         BRUTO    DESCUENTOS     IMPUESTOS     T O T A L    |
+---------------------------------------------------------------------------------------------------------------------------------------+
01                  CLASIFICACION DANE                    UNI         45.000 ** OBSEQUIO **
-----------------------------------------------------------------------------------------------------------------------------------------
Total Inventario    ETIQUETAS Y BOLSAS                                45.000             0             0             0             0
Total Inventario    ETIQUETAS Y BOLSAS                                45.000             0             0             0             0
-----------------------------------------------------------------------------------------------------------------------------------------
Total C.O.          PALMIRA2 OUTLET                                              1,001,346             0       160,254     1,161,600
Total C.O.          PALMIRA2 OUTLET                                              1,001,346             0       160,254     1,161,600
+---------------------------------------------------------------------------------------------------------------------------------------+
| UNO - VER 8.5.                                                                         HORA  :    5:56 PM |
|                                                                                                                    PAGINA:         15 |
|                                                                                                                                       |
| Empresa         : MA                                                                                                  |
| C.O.            : 011 CARTAGO                                                         Fecha Inicial : 2016/04/16  Hora Inicial:       |
| Tipo Inventario : 3   PRODUCTO TERMINADO                                              Fecha Final   : 2016/04/16  Hora Final  :       |
+---------------------------------------------------------------------------------------------------------------------------------------+
|GRUPO              DESCRIPCION                           U.M.      CANTIDAD         BRUTO    DESCUENTOS     IMPUESTOS     T O T A L    |
+---------------------------------------------------------------------------------------------------------------------------------------+
01                  CLASIFICACION DANE                    UNI         26.000       853,537       225,943       100,415       728,009
-----------------------------------------------------------------------------------------------------------------------------------------
Total Inventario    PRODUCTO TERMINADO                                26.000       853,537       225,943       100,415       728,009
Total Inventario    PRODUCTO TERMINADO                                26.000       853,537       225,943       100,415       728,009