I've made a website here http://sycoscientistrecords.github.io . I have used the following code to determine the positions of various divs:
myscroll = {};
function getScrollpos(idname) {
    return document.getElementById(idname).offsetTop;
}
myscroll.point = [];
myscroll.idnames = []; 
myscroll.point[0] = getScrollpos("home");
myscroll.point[1] = getScrollpos("artists");
myscroll.point[2] = getScrollpos("songs");
myscroll.point[3] = getScrollpos("beats");
myscroll.point[4] = getScrollpos("contact");
The problem is that getScrollpos("beats"); returns 2766 but myscroll.point[3] returns 3124. Similarly getScrollpos("contact") return 3668 but myscroll.point[4] return 4046. On the other hand myscroll.point[0] and getScrollpos("home") both return the same value. And myscroll.point[1] and getScrollpos("artists") return same values too. Even if I remove all other javascript code from the source file the issue remains. 
Question: Why is 58 being added to third and fourth array elements in my code?
P.S: Although you can directly open the code of my website in dev tools. I've made a basic architecture with same javascript code to imitate the problem with the following code:
 var myscroll = {};
 myscroll.list = document.getElementsByClassName("navbar-right")[0].getElementsByTagName("li");
 myscroll.bodypos = function getScrollY() {
   scrOfY = 0;
   if (typeof(window.pageYOffset) == 'number') {
     //Netscape compliant
     scrOfY = window.pageYOffset;
   } else if (document.body && (document.body.scrollLeft || document.body.scrollTop)) {
     //DOM compliant
     scrOfY = document.body.scrollTop;
   } else if (document.documentElement && (document.documentElement.scrollLeft || document.documentElement.scrollTop)) {
     //IE6 standards compliant mode
     scrOfY = document.documentElement.scrollTop;
   }
   return scrOfY;
 }
 function getScrollpos(idname) {
   return document.getElementById(idname).offsetTop;
 }
 myscroll.point = [];
 myscroll.point[0] = getScrollpos("home");
 myscroll.point[1] = getScrollpos("artists");
 myscroll.point[2] = getScrollpos("songs");
 myscroll.point[3] = getScrollpos("beats");
 myscroll.point[4] = getScrollpos("contact");
 function removeclass() {
   for (var i = 0; i < 5; i++) {
     myscroll.list[i].className = "";
   }
 }
 window.addEventListener('scroll', function(e) {
   if (myscroll.bodypos() >= myscroll.point[0]) {
     removeclass();
     myscroll.list[0].className = "active";
   }
   if (myscroll.bodypos() >= myscroll.point[1]) {
     removeclass();
     myscroll.list[1].className = "active";
   }
   if (myscroll.bodypos() >= myscroll.point[2]) {
     removeclass();
     myscroll.list[2].className = "active";
   }
   if (myscroll.bodypos() >= myscroll.point[3]) {
     removeclass();
     myscroll.list[3].className = "active";
   }
   if (myscroll.bodypos() >= myscroll.point[4]) {
     removeclass();
     myscroll.list[4].className = "active";
   }
 });
 for (var j = 0; j < 5; j++) {
   (function(j) {
     myscroll.list[j].anchor = document.getElementsByClassName("navbar-right")[0].getElementsByTagName("li")[j].getElementsByTagName("a")[0];
     myscroll.list[j].anchor.addEventListener("click", function(event) {
          event.preventDefault();
       if ((document.body.scrollTop != undefined) && (document.body.scrollTop < myscroll.point[j])) {
         var clr1 = setInterval(function() {
           if (document.body.scrollTop < myscroll.point[j] - 10) {
             document.body.scrollTop += 3;
           } else {
             document.body.scrollTop = myscroll.point[j];
             clearInterval(clr1);
           }
         }, 1);
       }
       if ((document.documentElement.scrollTop != undefined) && (document.documentElement.scrollTop < myscroll.point[j])) {
         var clr2 = setInterval(function() {
           if (document.documentElement.scrollTop < myscroll.point[j] - 10) {
             document.documentElement.scrollTop += 3;
           } else {
             document.documentElement.scrollTop = myscroll.point[j];
             clearInterval(clr2);
           }
         }, 1);
       }
       if ((document.body.scrollTop != undefined) && (document.body.scrollTop > myscroll.point[j])) {
         var clr3 = setInterval(function() {
           if (document.body.scrollTop >= myscroll.point[j] + 4) {
             document.body.scrollTop -= 3;
           } else {
             document.body.scrollTop = myscroll.point[j];
             clearInterval(clr3);
           }
         }, 1);
       }
       if ((document.documentElement.scrollTop != undefined) && (document.documentElement.scrollTop > myscroll.point[j])) {
         var clr4 = setInterval(function() {
           if (document.documentElement.scrollTop >= myscroll.point[j] + 4) {
             document.documentElement.scrollTop -= 3;
           } else {
             document.documentElement.scrollTop = myscroll.point[j];
             clearInterval(clr4);
           }
         }, 1);
       }
       alert(j);
     }, true);
   }(j));
 }
#navbar,
#navbar a:link,
#navbar a:visited,
#navbar a:hover {
  position: fixed;
  color: red !important;
}
#home {
  width: 500px;
  height: 500px;
  background-color: black;
  display: block;
}
#artists {
  width: 500px;
  height: 500px;
  background-color: gray;
  display: block;
}
#songs {
  width: 500px;
  height: 500px;
  background-color: yellow;
  display: block;
}
#beats {
  width: 500px;
  height: 500px;
  background-color: blue;
  display: block;
}
#contact {
  width: 500px;
  height: 500px;
  background-color: green;
  display: block;
}
<div id="navbar" class="navbar-collapse collapse">
  <ul class="nav navbar-nav navbar-right">
    <li class="active"><a href="#">Home</a>
    </li>
    <li><a href="#artists">Artists</a>
    </li>
    <li><a href="#songs">Songs</a>
    </li>
    <li><a href="#beats">Beats</a>
    </li>
    <li><a href="#contact">Contact</a>
    </li>
  </ul>
</div>
<div id="home"></div>
<div id="artists"></div>
<div id="songs"></div>
<div id="beats"></div>
<div id="contact"></div>