I'm trying to create a Maven artifact which should create an executable package (in JAR format), and this artifact depends on another project which itself depends on the artifact org.apache.uima.uimafit-core 2.1.0:
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>com.stackoverflow.examples</groupId>
    <artifactId>amend-included-resource</artifactId>
    <version>0.0.1-SNAPSHOT</version>
    <packaging>jar</packaging>
    <name>${project.artifactId}</name>
    <properties>
        <java.version>1.8</java.version>
        <mainClass>com.stackoverflow.examples.AnalysisEngineTest</mainClass>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    </properties>
    <build>
        <plugins>
            <plugin>
                <!-- Adapted from <http://stackoverflow.com/a/574650/1391325> -->
                <artifactId>maven-assembly-plugin</artifactId>
                <version>2.6</version>
                <configuration>
                    <archive>
                        <manifest>
                            <addClasspath>true</addClasspath>
                            <mainClass>${mainClass}</mainClass>
                        </manifest>
                    </archive>
                    <descriptorRefs>
                        <descriptorRef>jar-with-dependencies</descriptorRef>
                    </descriptorRefs>
                </configuration>
                <executions>
                    <execution>
                        <id>make-assembly</id> <!-- this is used for inheritance merges -->
                        <phase>package</phase> <!-- bind to the packaging phase -->
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.5.1</version>
                <configuration>
                    <source>${java.version}</source>
                    <target>${java.version}</target>
                </configuration>
            </plugin>
        </plugins>
    </build>
    <dependencies>
        <dependency>
            <groupId>com.stackoverflow.examples</groupId>
            <artifactId>uimafit-stuff</artifactId>
            <version>0.0.1-SNAPSHOT</version>
        </dependency>
    </dependencies>
</project>
The dependency uimafit-stuff defines a uimaFIT types.txt type description file under main/resources/META-INF/types.txt:
classpath*:desc/type/metadata.xml
Therefore, the project structure look something like this:
uimafit-stuff
├── desc
│   ├── type
│   │   ├── metadata.xml
├── META-INF
│   ├── org.apache.uima.fit
│   │   ├── types.txt < "classpath*:desc/type/metadata.xml"
Additionally, I have my own types.txt file under amend-included-resource/src/main/resources/META-INF/types.txt:
classpath*:desc/types/MyOwnSpecialType.xml
In order for my package to work, I need the union of the sets of type descriptors represented by each of these files (i.e. I need to append my type descriptor paths to the included file or vice versa). When I run mvn package, the artifact file without dependencies contains only "my" types.txt:
amend-included-resource-0.0.1-SNAPSHOT.jar
├── desc
│   ├── types
│   │   ├── MyOwnSpecialType.xml
├── META-INF
│   ├── org.apache.uima.fit
│   │   ├── types.txt < "classpath*:desc/types/MyOwnSpecialType.xml"
However, the JAR created during assembly using the descriptor jar-with-dependencies contains the types.txt file from uimafit-stuff and not the one from my own project:
amend-included-resource-0.0.1-SNAPSHOT-jar-with-dependencies.jar
├── desc
│   ├── type
│   │   ├── metadata.xml
│   ├── types
│   │   ├── MyOwnSpecialType.xml
├── META-INF
│   ├── org.apache.uima.fit
│   │   ├── types.txt < "classpath*:desc/type/metadata.xml"
How can I then ensure that both versions of the resource types.txt are somehow "unified" so that I can run my assembled jar without runtime errors?
 
    