Question 1 I try to save a leaflet map created with rMaps here, into a html file.
L2 <- Leaflet$new()
L2$setView(c(29.7632836,  -95.3632715), 10)
L2$tileLayer(provider = "MapQuestOpen.OSM")
L2
library(htmlwidgets)
saveWidget(L2,"t.html")
But I got an error:
Error in envRefInferField(x, what, getClass(class(x)), selfEnv) : 
  ‘width’ is not a valid field or method name for reference class “Leaflet”
Answer 1 Thanks to LukeA, we can use this syntaxe:
leaflet(width = "100%") %>% 
  addProviderTiles("MapQuestOpen.OSM") %>% 
  setView(-95.3632715, 29.7632836, zoom = 10) -> L2 
Question 2 But then, how to add addAssets and setTemplate:
# Add leaflet-heat plugin. Thanks to Vladimir Agafonkin
L2$addAssets(jshead = c(
  "http://leaflet.github.io/Leaflet.heat/dist/leaflet-heat.js"
))
# Add javascript to modify underlying chart
L2$setTemplate(afterScript = sprintf("
<script>
  var addressPoints = %s
  var heat = L.heatLayer(addressPoints).addTo(map)           
</script>
", rjson::toJSON(crime_dat)
))
L2
Answer 2 Again, thanks to LukeA, we have the answer:
L2$save(tf <- tempfile(fileext = ".html"),standalone=TRUE)
Question 3
In fact, my initial problem is that I can't write the code in rmarkdown, in order to generate directly the map in the html document.
Now I can save the map alone. But how to integrate it into the html document ? The rapide solution is to make an iframe. It there any other more elegant solutions ?