So im trying to implment user login for my a asp.net core application. Im following the microsoft tutorial here. I have two contexts, one called SchoolContext for saving all the school related models, and another context called ApplicationDbContext for the Account models. This is all being saved to a sqlite database. 
Everything works fine, up until I try to register a user to my context. When I try to register a user i get, cant find AspNetUsers table error. If I look in the database I don’t see the AspNetUser table. I tried adding migrations, but i still get that same error. Why is the table not being created ? 
Startup.cs
public class Startup {
        public IConfigurationRoot Configuration { get; }
        public Startup(IHostingEnvironment env) {
            var builder = new ConfigurationBuilder()
                .SetBasePath(env.ContentRootPath)
                .AddJsonFile("appsettings.json", optional: true, reloadOnChange: true)
                .AddJsonFile($"appsettings.{env.EnvironmentName}.json", optional: true)
                .AddEnvironmentVariables();
            Configuration = builder.Build();
        }
        // This method gets called by the runtime. Use this method to add services to the container.
        public void ConfigureServices(IServiceCollection services) {
            // Add Context services
            services.AddDbContext<SchoolContext>(options =>
                options.UseSqlite(Configuration.GetConnectionString("MainConnection")));
            services.AddDbContext<ApplicationDbContext>(options =>
                options.UseSqlite(Configuration.GetConnectionString("MainConnection")));
            // Add Identify servies 
            services.AddIdentity<ApplicationUser, IdentityRole>()
                .AddEntityFrameworkStores<ApplicationDbContext>()
                .AddDefaultTokenProviders();
            // Add framework services
            services.AddMvc();
        }
        // This method gets called by the runtime. Use this method to configure the HTTP request pipeline.
        public void Configure(IApplicationBuilder app, IHostingEnvironment env, ILoggerFactory loggerFactory, SchoolContext context) {
            loggerFactory.AddConsole(Configuration.GetSection("Logging"));
            loggerFactory.AddDebug();
            // Config hot module replacement
            if (env.IsDevelopment()) {
                app.UseDeveloperExceptionPage();
                app.UseWebpackDevMiddleware(new WebpackDevMiddlewareOptions {
                    HotModuleReplacement = true
                });
            }
            else {
                app.UseExceptionHandler("/Home/Error");
            }
            app.UseStaticFiles();
            // Enabled Identity
            app.UseIdentity();
            // Confgure routes 
            app.UseMvc(routes => {
                routes.MapRoute(
                    name: "default",
                    template: "{controller=Home}/{action=Index}/{id?}");
                routes.MapSpaFallbackRoute(
                    name: "spa-fallback",
                    defaults: new { controller = "Home", action = "Index" });
            });
            // Initialize school database [FOR TESTING] 
            DbInitializer.Initialize(context);
        }
    }
ApplicationDbContext.cs
namespace ContosoUniversity.Data
{
    public class ApplicationDbContext : IdentityDbContext<ApplicationUser>
    {
        public ApplicationDbContext(DbContextOptions<ApplicationDbContext> options): base(options)
        {
        }
        protected override void OnModelCreating(ModelBuilder builder)
        {
            base.OnModelCreating(builder);
        }
    }
}
ApplicationUser.cs
namespace ContosoUniversity.Models
{
    // Add profile data for application users by adding properties to the ApplicationUser class
    public class ApplicationUser : IdentityUser
    {
    }
}
appsettings.json
  "ConnectionStrings": {
    "MainConnection": "Data Source=/home/Josn/AspNetCore/ContosoUniversity/Databases/database.db"
  },
Error
fail: Microsoft.EntityFrameworkCore.Query.RelationalQueryCompilationContextFactory[1]
      An exception occurred in the database while iterating the results of a query.
      Microsoft.Data.Sqlite.SqliteException: SQLite Error 1: 'no such table: AspNetUsers'.
         at Microsoft.Data.Sqlite.Interop.MarshalEx.ThrowExceptionForRC(Int32 rc, Sqlite3Handle db)
         at Microsoft.Data.Sqlite.SqliteCommand.ExecuteReader(CommandBehavior behavior)
         at Microsoft.Data.Sqlite.SqliteCommand.ExecuteReaderAsync(CommandBehavior behavior, CancellationToken cancellationToken)
         at Microsoft.Data.Sqlite.SqliteCommand.<ExecuteDbDataReaderAsync>d__53.MoveNext()
      --- End of stack trace from previous location where exception was thrown ---
         at System.Runtime.CompilerServices.TaskAwaiter.ThrowForNonSuccess(Task task)
         at System.Runtime.CompilerServices.TaskAwaiter.HandleNonSuccessAndDebuggerNotification(Task task)
         at Microsoft.EntityFrameworkCore.Storage.Internal.RelationalCommand.<ExecuteAsync>d__20.MoveNext()
      --- End of stack trace from previous location where exception was thrown ---
         at System.Runtime.CompilerServices.TaskAwaiter.ThrowForNonSuccess(Task task)
         at System.Runtime.CompilerServices.TaskAwaiter.HandleNonSuccessAndDebuggerNotification(Task task)
         at Microsoft.EntityFrameworkCore.Query.Internal.AsyncQueryingEnumerable.AsyncEnumerator.<MoveNext>d__8.MoveNext()
      --- End of stack trace from previous location where exception was thrown ---
         at System.Runtime.CompilerServices.TaskAwaiter.ThrowForNonSuccess(Task task)
         at System.Runtime.CompilerServices.TaskAwaiter.HandleNonSuccessAndDebuggerNotification(Task task)
         at Microsoft.EntityFrameworkCore.Query.Internal.AsyncLinqOperatorProvider.<_FirstOrDefault>d__82`1.MoveNext()
      --- End of stack trace from previous location where exception was thrown ---
         at System.Runtime.CompilerServices.TaskAwaiter.ThrowForNonSuccess(Task task)
         at System.Runtime.CompilerServices.TaskAwaiter.HandleNonSuccessAndDebuggerNotification(Task task)
         at Microsoft.EntityFrameworkCore.Query.Internal.TaskResultAsyncEnumerable`1.Enumerator.<MoveNext>d__3.MoveNext()
      --- End of stack trace from previous location where exception was thrown ---
         at System.Runtime.CompilerServices.TaskAwaiter.ThrowForNonSuccess(Task task)
         at System.Runtime.CompilerServices.TaskAwaiter.HandleNonSuccessAndDebuggerNotification(Task task)
         at Microsoft.EntityFrameworkCore.Query.Internal.AsyncLinqOperatorProvider.ExceptionInterceptor`1.EnumeratorExceptionInterceptor.<MoveNext>d__5.MoveNext()
 
     
    