For each project, the configuration properties are saved in the \nbproject\configurations.xml (%UserProfile%\Documents\NetBeansProjects\ProjectName\nbproject\configurations.xml) file.
You could share the configurations.xml file between projects so that you won't have to change and apply every setting.
You could create a default project and configure it however you like. Instead of creating a new project, you could copy it, and name it something else.
If you want the toolchain properties to apply to every project, you will need to manually modify your toolchain definition or create a new one.
For finding the netbeans.conf configuration file on different platforms, see:
For finding the user directories on different platforms, see:
For information on tool collection descriptors, see: