I am writing a program that has to decode QR Codes. The codes are internally represented as a 2D Boolean List. The codes will usually be read as text files containing 1s and 0s, where 1 means a dark module (true) in the matrix, and 0 a light module (false).
I have to implement a method, which will take an InputStream and then has to return a QR Code back. I'll have to read .txt which contains 1s, 0s and comment lines beginning with '#'. I need to make the method ignore those comment lines, but I am not sure how to do it.
Here are some relevant parts of the code:
First the QR Code constructor (All of the methods used in the constructor work and do their job):
public class QRCode {
private List<List<Boolean>> data; //A 2D Boolean matrix, true means black, false means white.
public QRCode(List<List<Boolean>> data)
{
    if (data == null)
        throw new NullPointerException();
    if (QRCode.isQuadratic(data) == false)
        throw new InvalidQRCodeException("Matrix must be quadratic!");
    if (QRCode.versionCheck(data) < 1 || QRCode.versionCheck(data) > 40)
        throw new InvalidQRCodeException("Invalid Dimensions (Version).");
    if (QRCode.correctlyAlligned(data) != true)
        throw new InvalidQRCodeException("Improper Allignment!");
    if (QRCode.correctTimers(data) != true)
        throw new InvalidQRCodeException("Incorrect Timing Pattern!");
    if (QRCode.correctFormatting(data) != true)
        throw new InvalidQRCodeException("Incorrect Formatting!"); 
    this.data = data; 
}   
}
This is the method I'm referring to. What I wrote sofar at least. Also, if the .txt file contains anything other than 1s, 0s and comment, it should throw an exception. PS: I've never used InputStreams before, I tried googling this but all answers I found were for specific types of Streams, and they use a .readLine() method, which my IS here is not letting me use.
public static QRCode fromFile(InputStream is) throws IOException 
{   
    int i;
    List<List<Boolean>> data = new ArrayList<>(); //a 2D Boolean Matrix
    int y = -1, x = -1;
    if (is == null)
        throw new NullPointerException();
    while((i = is.read())!=-1) //Reading begin
    {
        if (i == (byte) '\n') //If a line in .txt file ends.
        {
            y++; 
            data.add(new ArrayList<Boolean>());
            x = 0;
        }
        if ((char) i == '1') //|| (char) i == '0')
        {
            data.get(y).add(true);
            x++;
        }
        if ((char) i == '0') //||
        {
            data.get(y).add(false);
            x++;
        }
    }
    return new QRCode(data);
}
An example of text files that I'd be handling:
# name: small
# type: bool matrix
# rows: 25
# columns: 25
1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1
1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 1
1 0 1 1 1 0 1 0 0 1 0 1 0 1 0 1 0 0 1 0 1 1 1 0 1
1 0 1 1 1 0 1 0 0 0 1 1 0 1 0 0 0 0 1 0 1 1 1 0 1
1 0 1 1 1 0 1 0 0 0 1 1 1 0 0 0 1 0 1 0 1 1 1 0 1
1 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1
1 1 1 1 1 1 1 0 1 0 1 0 1 0 1 0 1 0 1 1 1 1 1 1 1
0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0
1 1 0 1 1 0 1 0 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 1
1 1 1 1 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 1 1 1 0 0 0
1 0 0 1 1 1 1 0 1 1 0 0 1 1 0 1 1 0 1 1 1 0 1 0 1
0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0
0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 0 1 0 1 1 0 1 0 1 1
1 1 0 0 0 1 0 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 0 1 0
1 1 1 0 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1
1 0 1 1 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 1 1 0 1
1 0 1 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 0 1 1 1
0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 1 0 1 0 1
1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 0 1 0 1 0 1 1 0 0 1
1 0 0 0 0 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 1 1 0 0 0
1 0 1 1 1 0 1 0 1 0 0 1 0 1 0 1 1 1 1 1 1 1 0 1 1
1 0 1 1 1 0 1 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 1 1
1 0 1 1 1 0 1 0 0 0 1 1 0 1 0 0 1 1 0 1 1 0 0 1 1
1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 1 1 0 1 1 1 1
1 1 1 1 1 1 1 0 1 0 1 1 1 1 0 0 1 0 1 0 0 1 0 0 1