I'm having some problems finding the cause where rotated elements and their content disappears when scrolling down in my polymer app with chrome.
The problem happens when a rotated element that is fixed is placed within  a app-header-layout element and there is a  paper-input element present.
The problem still persists in shadow DOM rendering.
This is the smallest reproducible snippet that I've managed to produce. https://jsbin.com/celarureyo/1/edit?html,output
<!DOCTYPE html>
<html lang="en">
<head>
  <meta charset="UTF-8">
  <base href="https://polygit.org/components/">
  <script>
    window.Polymer = {
      dom: 'shady'
    };
  </script>
  <script src="webcomponentsjs/webcomponents-lite.js"></script>
  <link rel="import" href="polymer/polymer.html">
  <link rel="import" href="app-layout/app-header-layout/app-header-layout.html">
  <link rel="import" href="paper-input/paper-input.html">
  <style>
    html,
    body {
      padding: 0px;
      margin: 0px;
      height: 100vh;
      width: 100vw;
      font-family: Noto, Roboto;
      color: white;
      background-color: #eee;
    }
    paper-input {
      padding: 24px;
    }
    #content {
      height: 200vh;
    }
    #rotated-fixed-box {
      position: fixed;
      background-color: tomato;
      width: 64px;
      height: 64px;
      display: flex;
      justify-content: center;
      align-items: center;
      bottom: 32px;
      left: 32px;
      transform: rotate(45deg);
    }
    #regular-fixed-box {
      position: fixed;
      background-color: #0097B2;
      display: flex;
      justify-content: center;
      align-items: center;
      width: 64px;
      height: 64px;
      bottom: 32px;
      left: 128px;
    }
    #rotated-inner-box {
      background-color: tomato;
      width: 32px;
      height: 32px;
      display: flex;
      justify-content: center;
      align-items: center;
      transform: rotate(45deg);
    }
  </style>
  <body>
    <app-header-layout id="header-layout" has-scrolling-region>
      <div id="content">
        <paper-input label="This is weird"></paper-input>
        <div id="rotated-fixed-box">text</div>
        <div id="regular-fixed-box">
          <div id="rotated-inner-box">text</div>
        </div>
      </div>
    </app-header-layout>
  </body>
</html>