Parent and window.frame functions to allow cross-DOM selecting. To test if this works the code needs to be uploaded to a live server. Test will not work local.
HTML
<script type="text/javascript">
                             /* ------------------- Remove active1 class interframe function ------------------- */
                             window.frames['#iframe1'].proFunction()
                             function proFunction(){
                               $('#test1000').removeClass('active1');
                               $('#test3000').addClass('active1');
                             }
                             function resumeFunction(){
                               $('#test1000').removeClass('active1');
                               $('#test2000').addClass('active1');
                             }
                             /* ------------------- End ------------------- */
</script>
<!-- Navbar -->
<div class="navdown hidden">
    <ul id="top-menu" style="margin:0 0 0 0">
        <li class="active1" id="test1000">
            <a data-height="100%" data-src="test_page_1.html" data-width="100%" id="test1"><i class="lnr lnr-file-empty"><small style="font-size: 65%"> Page 1</small></i></a>
        </li>
        <li id="test2000">
            <a data-height="100%" data-src="test_page_2.html" data-width="100%" id="test2"><i class="lnr lnr-file-empty "><small style="font-size: 65%"> Page 2</small></i></a>
        </li>
        <li id="test3000">
            <a data-height="100%" data-src="test_page_3.html" data-width="100%" id="test3"><i class="lnr lnr-file-empty"><small style="font-size: 65%"> Page 3<small></i></a>
        </li>
    </ul>
</div>
<!-- iFrame -->
<div id="main" >
<iframe frameborder="0" height="100%" id="iframe1" name="iframe1" scrolling="yes" src="test_page_1.html" 
style="display:block;position:absolute;" width="100%"></iframe> 
<!-- Scripts -->
JS
$("#link2").click(function(){
parent.proFunction();
});
$("#link3").click(function(){
parent.proFunction();
});
$('.navdown ul li').on('click', function(){
$('ul li.active1').removeClass('active1');
$(this).addClass('active1');
});
$("#test1").on('click', function() {
var src = $(this).data('src'),
    width = $(this).data('width'),
    height = $(this).data('height');
$('#iframe1').css({
    width: width,
    height: height
}).attr('src', src);
});
$("#test2").on('click', function() {
var src = $(this).data('src'),
    width = $(this).data('width'),
    height = $(this).data('height');
$('#iframe1').css({
    width: width,
    height: height
}).attr('src', src);
});
$("#test3").on('click', function() {
var src = $(this).data('src'),
    width = $(this).data('width'),
    height = $(this).data('height');
$('#iframe1').css({
    width: width,
    height: height
}).attr('src', src);
});
Test Page 1
<a href="test_page_2.html" id="link2">Go to test page 2</a>
<a href="test_page_3.html" id="link3">Go to test page 3</a>