Since I haven't seen an answer using Object.entries here's one. Note, due to Object.entries() implementation being significantly slower than Object.keys(), this will also be slower than the accepted answer, but some may prefer this for readability or extendability (easier to pass a different filtering function).
const acceptedValues = ["value1", "value3"];
const myObject = {
    prop1:"value1",
    prop2:"value2",
    prop3:"value3"
};
const filteredEntries = Object.entries(myObject).filter(([, v]) => acceptedValues.includes(v));
const filteredObject = Object.fromEntries(filteredEntries);
Or as a longish one-liner:
const filteredObject = Object.fromEntries(Object.entries(myObject).filter(([, v]) => accepted.includes(v)));