I didn't add a comment in this Debug Scala Post because in my opinion it was another setup.
I had a similiar problem with Maven instead of SBT. I used Maven because the complete Java project was built upon it and I only wanted to debug my Gatling Scala code. However I'm not able to debug the code with the IDE.
Here's what I tried:
- Clean the built 
mvn clean install - Invalidate caches in IDEA with the menu button
 - Use 
printlnto see whether the code is reached - worked - Redeploy the project on the Glassfish
 - Delete the generated files in the Glassfish and redeploy
 
This is my current setup:
- Maven 3.3.9
 - Glassfish Payara 4 build 163
 - IDEA 2016.3.4. built on January 31 2017
 - JDK 1.8.0_51
 - Gatling 2.2.3
 - Scala-Maven-Plug 3.2.2
 
My solution is as follows.