If you want to be sure your program only runs in the command line, you may use the WScript.StdIn and WScript.StdOut objects/properties:
var myString = WScript.StdIn.ReadLine();
WScript.StdOut.WriteLine(myString);
and run it with cscript.exe. But if you want it to be a GUI program, it is a bit more difficult considering that JScript doesn't have a native InputBox function like VBScript. However, as described here we may use Windows Script Host (WSH). Create a .wsf file:
<?xml version="1.0" encoding="ISO-8859-1"?>
<job id="testJScriptInputBox">
    <script language="VBScript">
    <![CDATA[
        Function WSHInputBox(Message, Title, Value)
            WSHInputBox = InputBox(Message, Title, Value)
        End Function
    ]]>
    </script>
    <script language="JScript">
    <![CDATA[
        var vbOKOnly = 0;                // Constants for Popup
        var vbInformation = 64;
        var title = "InputBox function for JScript";
        var prompt = "Enter a string: ";
        var WshShell = WScript.CreateObject("WScript.Shell");
        var result = WSHInputBox(prompt, title, "New York");
        if (result != null)   
        {  // Cancel wasn't clicked, so get input.
            var intDoIt =  WshShell.Popup(result,
                                          0,
                                          "Result",
                                          vbOKOnly + vbInformation);
        }
        else
        { // Cancel button was clicked.
            var intDoIt =  WshShell.Popup("Sorry, no input",
                                          0,
                                          "Result",
                                          vbOKOnly + vbInformation);
        }                           
    ]]>
    </script>
</job>
and run it with either cscript.exe or wscript.exe. Alternatively, you could also use HTML Application (HTA) to create more elaborate GUIs.