you can execute the jar file with in java program.
make sure that you have added Manifest file in the jar which has Main-Class attribute.
My steps and output:
Created manifest file with the following line: Main-Class: com.demo.TestJar
Created Test Java program:
package com.demo;
  public class TestJar extends Object {
  public static void main(String args[]) {
    System.out.println("TestJar");
  }
}
Package the jar : jar cvfm /home/user/TestJarOne.jar manifest.txt 
Write test program:
import java.io.BufferedInputStream;
import java.io.IOException;
public class TestJSS extends Object {
static int i = 0;
public static void main(String args[]) throws IOException, InterruptedException {
    System.out.println("Calling jar");
    Process p = Runtime.getRuntime().exec("java -jar /home/user/TestJarOne.jar arg1 arg2");
    BufferedInputStream bis = new BufferedInputStream(p.getInputStream());
    synchronized (p) {
        p.waitFor();
    }
    System.out.println(p.exitValue());
    int b=0;
    while((b=bis.read()) >0){
        System.out.print((char)b);    
    }        
    System.out.println("");
    System.out.println("Called jar");
  }
}