I have a program that reads and writes to a file. When I restart the program a few times, then the whole file is blank, so now the program won't start.
EDIT :
I have added the main class, to the post.
Code:
Game Class:
package gui;
import java.awt.AWTException;
import java.awt.event.KeyEvent;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.OutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.Properties;
import java.util.logging.Level;
import java.util.logging.Logger;
public class Game2 extends javax.swing.JFrame implements Runnable {
// Took out the menu items
/**
 * Creates new form Game
 */
public Game2() {
    initComponents();
}
// Class declarations
static final ShopExtras SE = new ShopExtras();
// Number values
static int clicks = 0 + read(0);
static int coins = 0 + read(1);
static int upgrade = 0 + read(2);
static int clicksToday = 0;
// Booleans
static boolean clickLoop = true;
public static void write() {
    Properties prop = new Properties();
    OutputStream writer = null;
    // Creates array copy of the values
    int[] data = new int[4];
    data[0] = clicks + 0;
    data[1] = upgrade + 0;
    data[2] = coins + 0;
    try {
        // Creates the file
        writer = new FileOutputStream("config.properties");
        // Adds the properties to the file
        prop.setProperty("clicks", "" + data[0]);
        prop.setProperty("upgrade", "" + data[1]);
        prop.setProperty("coins", "" + data[2]);
        prop.setProperty("click amount", "" + data[3]);
        prop.store(writer, null);
    } catch (IOException io) {
        io.printStackTrace();
    } finally {
        if (writer != null) {
            try {
                writer.close();
            } catch (IOException e) {
                e.printStackTrace();
            }
        }
    }
}
public static int read(int i) {
    Properties prop = new Properties();
    InputStream reader = null;
    // Arrays for loading data
    int[] intData = new int[5];
    String[] data = new String[5];
    try {
        // Finds the file
        reader = new FileInputStream("config.properties");
        // Gets the file
        prop.load(reader);
        data[0] = prop.getProperty("clicks");
        data[1] = prop.getProperty("coins");
        data[2] = prop.getProperty("upgrade");
        data[4] = prop.getProperty("clicks today");
        // Prints out requested value
        System.out.println(prop.stringPropertyNames());
        // Gets requested value
        intData[i] = Integer.parseInt(data[i]) + 0;
    } catch (IOException io) {
        io.printStackTrace();
    } finally {
        if (reader != null) {
            try {
                reader.close();
            } catch (IOException e) {
                e.printStackTrace();
            }
        }
    }
    // Returns requested value
    return intData[i] + 0;
}
public static void loopedTasks() {
    Thread t1 = new Thread() {
        @Override
        public void run() {
            while (true) {
                // First task
                label.setText("You have clicked: " + clicks + " times!");
                clickButton.setText("Click me! +" + 1);
                coinLabel.setText("You have: " + coins + " coins.");
                // Secondary Task
                write();
            }
        }
    };
    t1.start();
}
/**
 * This method is called from within the constructor to initialize the form.
 * WARNING: Do NOT modify this code. The content of this method is always
 * regenerated by the Form Editor.
 */
@SuppressWarnings("unchecked")
// <editor-fold defaultstate="collapsed" desc="Generated Code">                          
private void initComponents() {
    jMenu1 = new javax.swing.JMenu();
    jMenu4 = new javax.swing.JMenu();
    jMenu3 = new javax.swing.JMenu();
    jMenu6 = new javax.swing.JMenu();
    jPanel2 = new javax.swing.JPanel();
    resetButton = new javax.swing.JButton();
    clickButton = new javax.swing.JButton();
    label = new javax.swing.JLabel();
    coinLabel = new javax.swing.JLabel("You have: "+coins+" coins.");
    menuBar = new javax.swing.JMenuBar();
    shopMenu = new javax.swing.JMenu();
    clickerUpgrade = new javax.swing.JMenu();
    jMenu1.setText("jMenu1");
    jMenu4.setText("jMenu4");
    jMenu3.setText("jMenu3");
    jMenu6.setText("jMenu6");
    setDefaultCloseOperation(javax.swing.WindowConstants.EXIT_ON_CLOSE);
    jPanel2.setBorder(new javax.swing.border.SoftBevelBorder(javax.swing.border.BevelBorder.RAISED));
    resetButton.setText("Reset");
    resetButton.addActionListener(new java.awt.event.ActionListener() {
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            resetButtonActionPerformed(evt);
        }
    });
    clickButton.addActionListener(new java.awt.event.ActionListener() {
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            clickButtonActionPerformed(evt);
        }
    });
    label.setFont(new java.awt.Font("Tahoma", 1, 11)); // NOI18N
    label.setText("You have clicked: "+clicks+" times!");
    javax.swing.GroupLayout jPanel2Layout = new javax.swing.GroupLayout(jPanel2);
    jPanel2.setLayout(jPanel2Layout);
    jPanel2Layout.setHorizontalGroup(
        jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
        .addGroup(jPanel2Layout.createSequentialGroup()
            .addComponent(resetButton)
            .addGap(0, 0, Short.MAX_VALUE))
        .addGroup(jPanel2Layout.createSequentialGroup()
            .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING, false)
                .addComponent(coinLabel, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                .addGroup(javax.swing.GroupLayout.Alignment.LEADING, jPanel2Layout.createSequentialGroup()
                    .addGap(85, 85, 85)
                    .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                        .addComponent(clickButton, javax.swing.GroupLayout.PREFERRED_SIZE, 116, javax.swing.GroupLayout.PREFERRED_SIZE)
                        .addComponent(label))
                    .addGap(35, 35, 35)))
            .addContainerGap(90, Short.MAX_VALUE))
    );
    jPanel2Layout.setVerticalGroup(
        jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
        .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel2Layout.createSequentialGroup()
            .addComponent(coinLabel, javax.swing.GroupLayout.PREFERRED_SIZE, 19, javax.swing.GroupLayout.PREFERRED_SIZE)
            .addGap(18, 18, 18)
            .addComponent(label)
            .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 75, Short.MAX_VALUE)
            .addComponent(clickButton, javax.swing.GroupLayout.PREFERRED_SIZE, 41, javax.swing.GroupLayout.PREFERRED_SIZE)
            .addGap(90, 90, 90)
            .addComponent(resetButton))
    );
    shopMenu.setText("Shop");
    clickerUpgrade.setText("Clicker Upgrade");
    shopMenu.add(clickerUpgrade);
    xPointsMenu.setText("Multiplied Points");
    shopMenu.add(xPointsMenu);
    menuBar.add(shopMenu);
    jMenu2.setText("jMenu2");
    menuBar.add(jMenu2);
    coinMenu.setText("Coins");
    menuBar.add(coinMenu);
    setJMenuBar(menuBar);
    javax.swing.GroupLayout layout = new javax.swing.GroupLayout(getContentPane());
    getContentPane().setLayout(layout);
    layout.setHorizontalGroup(
        layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
        .addGroup(layout.createSequentialGroup()
            .addComponent(jPanel2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
            .addGap(0, 0, Short.MAX_VALUE))
    );
    layout.setVerticalGroup(
        layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
        .addComponent(jPanel2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
    );
    pack();
}// </editor-fold>                        
// Click and Reset
private void clickButtonActionPerformed(java.awt.event.ActionEvent evt) {                                            
    clicks = clicks + 1;
    System.out.println(1);
}                                           
private void resetButtonActionPerformed(java.awt.event.ActionEvent evt) {                                            
    clicks = 0;
    upgrade = 0;
}                                           
/**
 * @param args the command line arguments
 */
public static void main(String args[]) {
    /* Set the Nimbus look and feel */
    //<editor-fold defaultstate="collapsed" desc=" Look and feel setting code (optional) ">
    /* If Nimbus (introduced in Java SE 6) is not available, stay with the default look and feel.
     * For details see http://download.oracle.com/javase/tutorial/uiswing/lookandfeel/plaf.html 
     */
    try {
        for (javax.swing.UIManager.LookAndFeelInfo info : javax.swing.UIManager.getInstalledLookAndFeels()) {
            if ("Nimbus".equals(info.getName())) {
                javax.swing.UIManager.setLookAndFeel(info.getClassName());
                break;
            }
        }
    } catch (ClassNotFoundException ex) {
        java.util.logging.Logger.getLogger(Game2.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
    } catch (InstantiationException ex) {
        java.util.logging.Logger.getLogger(Game2.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
    } catch (IllegalAccessException ex) {
        java.util.logging.Logger.getLogger(Game2.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
    } catch (javax.swing.UnsupportedLookAndFeelException ex) {
        java.util.logging.Logger.getLogger(Game2.class.getName()).log(java.util.logging.Level.SEVERE, null, ex);
    }
    //</editor-fold>
    /* Create and display the form */
    java.awt.EventQueue.invokeLater(new Runnable() {
        @Override
        public void run() {
            new Game().setVisible(true);
            loopedTasks();
        }
    });
}
// Variables declaration - do not modify                     
public static javax.swing.JButton clickButton;
private javax.swing.JMenu clickerUpgrade;
private static javax.swing.JLabel coinLabel;
private javax.swing.JMenu coinMenu;
private javax.swing.JMenu jMenu1;
private javax.swing.JMenu jMenu2;
private javax.swing.JMenu jMenu3;
private javax.swing.JMenu jMenu4;
private javax.swing.JMenu jMenu6;
private javax.swing.JPanel jPanel2;
public static javax.swing.JLabel label;
private javax.swing.JMenuBar menuBar;
private javax.swing.JButton resetButton;
private javax.swing.JMenu shopMenu;
private javax.swing.JMenu xPointsMenu;
// End of variables declaration                   
@Override
public void run() {
    throw new UnsupportedOperationException("Not supported yet."); //To change body of generated methods, choose Tools | Templates.
}
}
Write Method:
    Properties prop = new Properties();
    OutputStream writer = null;
    // Creates array
    int[] data = new int[1];
    data[0] = 10;
    try {
        // Creates the file
        writer = new FileOutputStream("config.properties");
        // Adds properties to the file
        prop.setProperty("integer", "" + data[0]);
        prop.store(writer, null);
        ...
Read Method:
    Properties prop = new Properties();
    InputStream reader = null;
    // Arrays for loading data
    String[] data = new String[1];
    try {
        // Finds the file
        reader = new FileInputStream("config.properties");
        // Gets the file
        prop.load(reader);
        // Gets the property
        data[0] = prop.getProperty("integer");
    ...
Error: java.lang.ExceptionInInitializerError 
Caused by: java.lang.NumberFormatException: null
Fix:
Delete the config file. And run the program again. 
Any help is very much appreciated!
 
    
