Short answer: It looks like a compiler bug to me, caused
by the import of a C enumeration which defines multiple constants
with the same value.
Long answer: Unfortunately I do not have a solution how to avoid the deprecation
warning, only a possible explanation what causes it. 
The LAError codes are defined as a C enumeration in 
<LAError.h> in the LocalAuthentication framework. Here is an
extract of that definition:
// Error codes
#define kLAErrorAuthenticationFailed                       -1
#define kLAErrorUserCancel                                 -2
// ...
#define kLAErrorTouchIDNotAvailable                        -6
#define kLAErrorTouchIDNotEnrolled                         -7
#define kLAErrorTouchIDLockout                             -8
// ...
#define kLAErrorBiometryNotAvailable                        kLAErrorTouchIDNotAvailable
#define kLAErrorBiometryNotEnrolled                         kLAErrorTouchIDNotEnrolled
#define kLAErrorBiometryLockout                             kLAErrorTouchIDLockout
typedef NS_ENUM(NSInteger, LAError)
{
    LAErrorAuthenticationFailed = kLAErrorAuthenticationFailed,
    LAErrorUserCancel = kLAErrorUserCancel,
    // ...
    LAErrorTouchIDNotAvailable NS_ENUM_DEPRECATED(10_10, 10_13, 8_0, 11_0, "use LAErrorBiometryNotAvailable") = kLAErrorTouchIDNotAvailable,
    LAErrorTouchIDNotEnrolled NS_ENUM_DEPRECATED(10_10, 10_13, 8_0, 11_0, "use LAErrorBiometryNotEnrolled") = kLAErrorTouchIDNotEnrolled,
    LAErrorTouchIDLockout NS_ENUM_DEPRECATED(10_11, 10_13, 9_0, 11_0, "use LAErrorBiometryLockout")
    __WATCHOS_DEPRECATED(3.0, 4.0, "use LAErrorBiometryLockout") __TVOS_DEPRECATED(10.0, 11.0, "use LAErrorBiometryLockout") = kLAErrorTouchIDLockout,
    // ...
    LAErrorBiometryNotAvailable NS_ENUM_AVAILABLE(10_13, 11_0) __WATCHOS_AVAILABLE(4.0) __TVOS_AVAILABLE(11.0) = kLAErrorBiometryNotAvailable,
    LAErrorBiometryNotEnrolled NS_ENUM_AVAILABLE(10_13, 11_0) __WATCHOS_AVAILABLE(4.0) __TVOS_AVAILABLE(11.0) = kLAErrorBiometryNotEnrolled,
    LAErrorBiometryLockout NS_ENUM_AVAILABLE(10_13, 11_0) __WATCHOS_AVAILABLE(4.0) __TVOS_AVAILABLE(11.0) = kLAErrorBiometryLockout,
    // ...
} NS_ENUM_AVAILABLE(10_10, 8_0) __WATCHOS_AVAILABLE(3.0) __TVOS_AVAILABLE(10.0);
One can see that "old" (deprecated) and the "new" error codes use
the same values. For example, both  LAErrorTouchIDNotAvailable and LAErrorBiometryNotAvailable are defined as -6.
That is perfectly valid in C, but the raw values of a Swift enum must
be mutually distinct. Apparently the Swift importer solves that by
mapping the new/duplicate cases to static variables.
Here is an extract of the Swift mapping:
public struct LAError {
    public init(_nsError: NSError)
    public static var _nsErrorDomain: String { get }
    public enum Code : Int {
        case authenticationFailed
        case userCancel
        // ...
        @available(iOS, introduced: 8.0, deprecated: 11.0, message: "use LAErrorBiometryNotAvailable")
        case touchIDNotAvailable
        @available(iOS, introduced: 8.0, deprecated: 11.0, message: "use LAErrorBiometryNotEnrolled")
        case touchIDNotEnrolled
        @available(iOS, introduced: 9.0, deprecated: 11.0, message: "use LAErrorBiometryLockout")
        case touchIDLockout
        // ...
        @available(iOS 11.0, *)
        public static var biometryNotAvailable: LAError.Code { get }
        @available(iOS 11.0, *)
        public static var biometryNotEnrolled: LAError.Code { get }
        @available(iOS 11.0, *)
        public static var biometryLockout: LAError.Code { get }
        // ...
    }
    // ...
}
And this seems to be the cause for the deprecation warnings, and
also for the problem reported on the swift-users mailing list
that it is impossible to write an exhaustive and warning-free
switch statement for LAError.
To prove my conjecture, I have reproduced the problem with a custom
enumeration: Add the following definition to the bridging header
file of an macOS 10.13 or iOS 11 project:
#import <Foundation/Foundation.h>
typedef NS_ENUM(NSInteger, MyEnum)
{
    MyEnumA = 1,
    MyEnumB = 2,
    MyEnumC NS_ENUM_DEPRECATED(10_10, 10_13, 8_0, 11_0, "use MyEnumNewC") = 3,
    MyEnumNewC NS_ENUM_AVAILABLE(10_13, 11_0) = 3,
};
This is imported to Swift as
 public enum MyEnum : Int {
    case A
    case B
    @available(OSX, introduced: 10_10, deprecated: 10_13, message: "use MyEnumNewC")
    case C
    @available(OSX 10_13, *)
    public static var newC: MyEnum { get }
 }
with 3 cases for the first (distinct) enum values, and a static
property for the duplicate value.
And indeed, any use of MyEnum triggers a deprecation warning:
// main.swift:
print(MyEnum.A) // Or: let _: MyEnum? = nil
// Build log:
// <unknown>:0: warning: 'C' was deprecated in OS X 10.13: use MyEnumNewC
In addition, it is not possible to use the new enum value in a
switch statement:
func foo(err: MyEnum) {
    switch err {
    case .A:
        print("A")
    case .B:
        print("B")
    case .newC:
        print("C")
    }
}
// Build log:
// main.swift:12:9: error: switch must be exhaustive
// <unknown>:0: warning: 'C' was deprecated in OS X 10.13: use MyEnumNewC
even if the compiler (apparently) knows that these cases are exhaustive:
func foo(err: MyEnum) {
    switch err { // Switch must be exhaustive
    case .A:
        print("A")
    case .B:
        print("B")
    case .newC:
        print("C")
    default:
        print("default")
    }
}
// Build log:
// <unknown>:0: warning: 'C' was deprecated in OS X 10.13: use MyEnumNewC
// main.swift:19:9: warning: default will never be executed
This looks like a compiler bug to me.