I have problem with loading certifiacate to key store. I can create that certificate in console with this command openssl pkcs12 -export -out cloudCA.p12 -inkey Cloud\ privateLey.key -in cloudCa.pem -certfile rootCa.pem -name "cloudCA"
I figured out how to load cloudCA.pem with privateKey.key but I can't find a way how to add there rootCA.pem. This is my current code.  Thank 's for help. 
//Regular patterns for certificate.
private static final Pattern CERT_PATTERN = Pattern.compile(
        "-+BEGIN\\s+.*CERTIFICATE[^-]*-+(?:\\s|\\r|\\n)+" + // Header
                "([a-z0-9+/=\\r\\n]+)" +                    // Base64 text
                "-+END\\s+.*CERTIFICATE[^-]*-+",            // Footer
        CASE_INSENSITIVE);
private static final Pattern KEY_PATTERN = Pattern.compile(
        "-+BEGIN\\s+.*PRIVATE\\s+KEY[^-]*-+(?:\\s|\\r|\\n)+" + // Header
                "([a-z0-9+/=\\r\\n]+)" +                       // Base64 text
                "-+END\\s+.*PRIVATE\\s+KEY[^-]*-+",            // Footer
        CASE_INSENSITIVE);
public static KeyStore loadKeyStore(String certificate, String privateKey, Optional<String> keyPassword)
        throws IOException, GeneralSecurityException {
    List<X509Certificate> certificateChain = readCertificateChain(certificate);
    if (certificateChain.isEmpty()) {
        throw new CertificateException("Certificate file string does not contain any certificates: ");
    }
    //Load and customize key string to byte array.
    byte[] data = Base64.getDecoder().decode(privateKey.replace("\n","")
            .replace("-----BEGIN RSA PRIVATE KEY-----", "")
            .replace("-----END RSA PRIVATE KEY-----", "")
            .replace(" ", ""));
    /* Add PKCS#8 formatting */
    ASN1EncodableVector v = new ASN1EncodableVector();
    v.add(new ASN1Integer(0));
    ASN1EncodableVector v2 = new ASN1EncodableVector();
    v2.add(new ASN1ObjectIdentifier(PKCSObjectIdentifiers.rsaEncryption.getId()));
    v2.add(DERNull.INSTANCE);
    v.add(new DERSequence(v2));
    v.add(new DEROctetString(data));
    ASN1Sequence seq = new DERSequence(v);
    byte[] privKey = seq.getEncoded("DER");
    PKCS8EncodedKeySpec spec = new  PKCS8EncodedKeySpec(privKey);
    KeyFactory fact = KeyFactory.getInstance("RSA");
    PrivateKey key = fact.generatePrivate(spec);
    KeyStore keyStore = KeyStore.getInstance("JKS");
    keyStore.load(null, null);
    keyStore.setKeyEntry("CloudCA", key, keyPassword.orElse("").toCharArray(), certificateChain.stream().toArray(Certificate[]::new));
    return keyStore;
}
private static List<X509Certificate> readCertificateChain(String contents) throws GeneralSecurityException {
    Matcher matcher = CERT_PATTERN.matcher(contents);
    CertificateFactory certificateFactory = CertificateFactory.getInstance("X.509");
    List<X509Certificate> certificates = new ArrayList<>();
    int start = 0;
    while (matcher.find(start)) {
        byte[] buffer = Base64.getMimeDecoder().decode(matcher.group(1).getBytes(US_ASCII));
        certificates.add((X509Certificate) certificateFactory.generateCertificate(new ByteArrayInputStream(buffer)));
        start = matcher.end();
    }
    return certificates;
}
 
    