The problem here is the class col-auto, a class with no-dimention and IE11 can't "understand" how big is your "#progress" bar. You could remove that class using a fixed one: col, col-1, col-2, col-3... whatever you want and you'll see that also IE11 will begin to work.
I know, your next question will be "But why Chrome and Firefox work?" 'cause IE11 have several limitation using flexbox (https://caniuse.com/#search=flexbox) so you have to help him to understand what you really want 'cause sometimes... he is a completly bullheaded! :D :D :D
BTW, it is not a big problem here. Knowing his limitations, you can achieve your result trying another ways. In this particular case, I really don't know what you are trying to do, but I can post you some exemple to help you to find a solution.
For exemple, Do you want a 100% progress bar? Good, use col
$(document).ready(function() {
    $("#progress").progressbar({
        value: 50
    });
});
#progress {
  height: 10px;
}
#progress .ui-progressbar-value {
  background: red;
}
<link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
  <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet">
    <script src="https://code.jquery.com/jquery-3.3.1.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
  <script src="https://code.jquery.com/ui/1.12.1/jquery-ui.min.js" integrity="sha256-VazP97ZCwtekAsvgPBSUwPFKdrwD3unUfSGVYrahUqU=" crossorigin="anonymous"></script>
<div class="container-fluid vertical-center">
  <div class="row justify-content-center task">
  
    <div class="col stop-align-center">
          <!-- ^^^^ change here!-->
      <div class="row">
        <div class="col">
          <form>
            <div class="form-group">
              <input type="email" class="form-control" id="exampleInputEmail1" placeholder="Email">
            </div>
          </form>
        </div>
      </div>
      <div class="row" id="wrapper">
        <div class="col">
          <div class="row"> <!-- not unnecessary because in production there are more rows in parent col! -->
            <div class="col">
              <div id="progress"></div>
            </div>
          </div>
        </div>
      </div>
    </div>
  </div>
</div>
 
 
Or maybe do you prefer a well centered form similar to your exemple? Excellent, use a smaller col-4:
$(document).ready(function() {
    $("#progress").progressbar({
        value: 50
    });
});
#progress {
  height: 10px;
}
#progress .ui-progressbar-value {
  background: red;
}
<link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
  <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet">
<script src="https://code.jquery.com/jquery-3.3.1.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
  <script src="https://code.jquery.com/ui/1.12.1/jquery-ui.min.js" integrity="sha256-VazP97ZCwtekAsvgPBSUwPFKdrwD3unUfSGVYrahUqU=" crossorigin="anonymous"></script>
<div class="container-fluid vertical-center">
    <div class="row justify-content-center task">
      <div class="col-4 stop-align-center">
             <!-- ^^^^ change here!-->
        <div class="row">
          <div class="col">
            <div class="form-group">
              <input type="email" class="form-control" id="exampleInputEmail1" placeholder="Email">
            </div>
          </div>
        </div>
        <div class="row" id="wrapper">
          <div class="col">
            <div class="row"> <!-- not unnecessary because in production there are more rows in parent col! -->
              <div class="col">
                <div id="progress"></div>
              </div>
            </div>
          </div>
        </div>
      </div>
    </div>
  </div>
 
 
... and so on. Play with those classes and, in this work, always remember: Help IE11... or, more in general, help Explorer to understand what you really want! ;) 
Seriously, hope it helps.
Cheers!
EDIT 1
Trying to copy your image: https://i.stack.imgur.com/fTcRy.png I wrote this. Remember, use a col-* for your progressbar. It is all centered vertically and horizontaly. And it works well also with IE11 ;)
$(document).ready(function() {
    $("#progress").progressbar({
        value: 50
    });
});
body{
      height: 100vh;
      display: flex;
      align-items: center;
    }
    #progress {
      height: 10px;
    }
    #progress .ui-progressbar-value {
      background: red;
    }
<link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
  <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet">
<script src="https://code.jquery.com/jquery-3.3.1.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
  <script src="https://code.jquery.com/ui/1.12.1/jquery-ui.min.js" integrity="sha256-VazP97ZCwtekAsvgPBSUwPFKdrwD3unUfSGVYrahUqU=" crossorigin="anonymous"></script>
<body>
  <div class="container">
    <div class="row">
      <div class="col">
        content
      </div>
      <div class="col">
        content
      </div>
      <div class="col">
        <div class="form-group">
            <input type="email" class="form-control" id="exampleInputEmail1" placeholder="Email">
          </div>
      </div>
    </div>
    <div class="row justify-content-end">
      <div class="col-4">
        <div id="progress" class="mb-3"></div>
      </div>
    </div>
    <div class="row justify-content-end">
      <div class="col-4">
        <button type="button" class="btn btn-primary">Primary</button>
        <button type="button" class="btn btn-secondary">Secondary</button>
        <button type="button" class="btn btn-success">Success</button>
      </div>
    </div>
  </div>
  </body>