Recently I had a fresh install of macOS. I've installed Sourctree and diffmerge and set diffmerge as the default merge tool. For some reason everytime when I select 'Resolve Conflicts -> Open External Merge Tool' sourcetree opens its waiting view and directly closes it.
My settings page in sourcetree:
This is how my root .gitconfig looks like when sourcetree configures diff merge for me:
[core]
    excludesfile = /Users/[username]/.gitignore_global
[user] 
    name = ---- -----
    email = -----@-----.--
[commit]
    template = /Users/[username]/.stCommitMsg
[credential]
    helper =  !/Library/Java/JavaVirtualMachines/jdk1.8.0_131.jdk/Contents/Home/jre/bin/java -Ddebug=false -Djava.net.useSystemProxies=true -jar /usr/local/Cellar/git-credential-manager/2.0.4/libexec/git-credential-manager-2.0.4.jar
[difftool "DiffMerge"]
[mergetool "DiffMerge"]
[diff]
    tool = diffmerge
[difftool "diffmerge"]
    cmd = /usr/local/bin/diffmerge \"$LOCAL\" \"$REMOTE\"
[merge]
    tool = diffmerge
[mergetool "diffmerge"]
    trustExitCode = true
    cmd = /usr/local/bin/diffmerge --merge --result=\"$MERGED\" \"$LOCAL\" \"$BASE\" \"$REMOTE\"
[difftool "sourcetree"]
    cmd = /Applications/DiffMerge.app/Contents/MacOS/DiffMerge/Contents/MacOS/DiffMerge --nosplash \"$LOCAL\" \"$REMOTE\"
path = 
[mergetool "sourcetree"]
    cmd = /Applications/DiffMerge.app/Contents/MacOS/DiffMerge/Contents/MacOS/DiffMerge --merge --result=\"$MERGED\" \"$LOCAL\" \"$BASE\" \"$REMOTE\"
    trustExitCode = true

 
    

 
     
    