You may get all overlapping substrings starting with ( and ending with ) and having any amount of balanced nested parentheses inside using
var result = Regex.Matches(s, @"(?=(\((?>[^()]+|(?<o>)\(|(?<-o>)\))*(?(o)(?!)|)\)))").Cast<Match>().Select(x => x.Groups[1].Value);
See the regex demo online.
Regex details
The regex is a positive lookahead ((?=...)) that checks each position within a string and finds a match if its pattern matches. Since the pattern is enclosed with a capturing group ((...)) the value is stored in match.Groups[1] that you may retrieve once the match is found. \((?>[^()]+|(?<o>)\(|(?<-o>)\))*(?(o)(?!)|)\) is a known pattern that matches nested balanced parentheses.
C# demo:
var str = "((1+2)*(4+3))";
var pattern = @"(?=(\((?>[^()]+|(?<o>)\(|(?<-o>)\))*(?(o)(?!)|)\)))"; 
var result = Regex.Matches(str, pattern)
    .Cast<Match>()
    .Select(x => x.Groups[1].Value);
Console.WriteLine(string.Join("\n", result));
Output:
((1+2)*(4+3))
(1+2)
(4+3)