The question has been edited, look ahead for the Updated sections and all the different ways I approached it in order to find a solution.
Initial question
I tried to create an executable jar file for my project but I run to the error when trying to run it no main manifest attribute, in kerkinibackend.jar.
The project is a Spring Boot application and I am using IntelliJ as an IDE.
I tried to find the most common scenarios when this could happen from similar questions but I couldn't make it work any way.
The steps I took were :
- Opened IntelliJ.
- Opened the project's Structure on the top right icon.
- Navigated to the Artifact.
- Pressed the plus to add new artifact.
- JAR -> from modules with dependencies. (also tried it using the blank option while having a MANIFEST.MF file, which was automatically generated from the first time I tried it).
- Opened the folder for the Main class in the pop-up dialog and specified it. (also tried leaving the Main class empty as I read somewhere and left it connect with it through the Manifest).
- Left the rest as default. (this way IntelliJ also creates the needed Manifest, in case you have it already deleting the file will allow to generate it again)
- Then, I pressed Build -> Build Artifacts -> Build.
- The is created with a size of 57Mbs. I tried running it as an executable but I saw it wasn't working. Then I opened the cmd and ran java -jar kerkinibackend.jarand then the error message comes out. The thing is that theMANIFEST.MFfile is actually getting created insrc/main/java/META-INF
Manifest-Version: 1.0
Main-Class: com.teicm.kerkinibackend.KerkinibackendApplication
I also do have the needed dependency in pom.xml
    <build>
        <plugins>
            <plugin>
                <groupId>org.springframework.boot</groupId>
                <artifactId>spring-boot-maven-plugin</artifactId>
            </plugin>
        </plugins>
    </build>
UPDATE
I fixed the problem by changing the default generation of the manifest to be in the resources instead.
Now it the Jar runs but then I get and error from Spring No auto configuration classes found in META-INF/spring.factories. If you are using a custom packaging, make sure that file is correct.
Farther UPDATE
I tried to add an extra file the spring.factories (as a read in another answer Relevant question-answer) inside the META-INF folder in the resource folder in order to fix the previous problem. Now it didn't show the same error but a different one 
00:24:26.230 [main] ERROR org.springframework.boot.SpringApplication - Application run failed
org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'org.springframework.boot.autoconfigure.orm.jpa.HibernateJpaConfiguration': Unsatisfied dependency expressed through constructor parameter 0; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dataSource' defined in class path resource [org/springframework/boot/autoconfigure/jdbc/DataSourceConfiguration$Hikari.class]: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [com.zaxxer.hikari.HikariDataSource]: Factory method 'dataSource' threw exception; nested exception is org.springframework.boot.autoconfigure.jdbc.DataSourceProperties$DataSourceBeanCreationException: Failed to determine a suitable driver class
        at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:767)
        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:218)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1308)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1154)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:538)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:498)
        at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:320)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:318)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199)
        at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:391)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1288)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1127)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:538)
        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:498)
        at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:320)
        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:318)
        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:199)
        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1083)
        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:853)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:546)
        at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:140)
        at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:775)
        at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:397)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:316)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:1260)
        at org.springframework.boot.SpringApplication.run(SpringApplication.java:1248)
        at com.teicm.kerkinibackend.KerkinibackendApplication.main(KerkinibackendApplication.java:11)
But I don't know if this brings me a step closer or a step farther. And why wouldn't the MySQL data source be recognized. When I use the project locally everything works, it connects to MySQL, it has communication with the front end.
Trying a different build method using maven-assembly-plugin
I also tried using a different way to build the executable jar, through @Zsolt Tolvarys approach (you can find more about it at link). This approach uses in the pom.xml another plugin called maven-assembly-plugin.
Unfortunately doing the suggested steps does generate a jar file but when I try to run the generated jar that exists now in the /target folder, then I get an error message of Error: Could not find or load main class com.teicm.kerkinibackend.KerkinibackendApplication having changed of course in the plugin the name of the Main class :
<build>
        <plugins>
            <plugin>
                    <artifactId>maven-assembly-plugin</artifactId>
                <configuration>
                    <finalName>KerkiniBackEnd</finalName>
                    <appendAssemblyId>false</appendAssemblyId>
                    <archive>
                        <manifest>
                            <mainClass>com.teicm.kerkinibackend.KerkinibackendApplication</mainClass>
                        </manifest>
                    </archive>
                    <descriptorRefs>
                        <descriptorRef>jar-with-dependencies</descriptorRef>
                    </descriptorRefs>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>
        </plugins>
    </build>
For anyone having some spare time feel free to suggest me a solution or even try it him-her self. I really need to generate it, it's the last part of finishing my thesis...
The link for the Github repository is Github Repository
Thank you for your time and effort
 
    