You could use a cookie or localStorage variable for that. In this example, I am using a localStorage variable called nightMode, and I set it to either "ON" or "OFF". The correct CSS file is loaded based on the value of the variable.
Note that a localStorage variable is a variable saved in the browser without an expiry date, so this variable will stay saved in the browser even after the window is closed and re-opened.
//on page load, check localStorage value
var stylesheet = document.createElement('link');
stylesheet.rel = "stylesheet";
  
if(localStorage.getItem('nightMode') == "ON") {
  //add link to night mode CSS
  stylesheet.href = "path/to/nightmode.css";
  document.getElementsByTagName('head')[0].appendChild(stylesheet);
}
else {
  //add link to night mode CSS
  link.href = "path/to/normalmode.css";
  document.getElementsByTagName('head')[0].appendChild(stylesheet);
}
//set the nightmode at some point by calling this function
function toggleNightMode() {
  var currentMode = localStorage.getItem('nightMode');
  if(!currentMode) {
    //the vaeriable is not set, set it to default value
    localStorage.setItem("nightMode", "OFF");
  }
  else if(currentMode == "ON") {
    //current mode is ON, now set it to OFF
    localStorage.setItem("nightMode", "OFF");
  }
  else {
    //set to ON
    localStorage.setItem("nightMode", "ON");
  }
}