I'm getting IndexOutOfBoundsException while uploading a zip file. What could be the reason? How can I solve it?
Code:-
    String sf="";
    String contentType = req.getContentType();
    DataInputStream in = new DataInputStream(req.getInputStream());
    int formDataLength = req.getContentLength();
    byte dataBytes[] = new byte[formDataLength];
    int byteRead = 0;
    int totalBytesRead = 0;
    while (totalBytesRead < formDataLength) {
        byteRead = in.read(dataBytes, totalBytesRead, formDataLength);
        totalBytesRead += byteRead;
    }
    String file = new String(dataBytes);
    String saveFile = file.substring(file.indexOf("filename=\"") + 10);
    saveFile = saveFile.substring(0, saveFile.indexOf("\n"));
    saveFile = saveFile.substring(saveFile.lastIndexOf("\\") + 1,saveFile.indexOf("\""));
    int lastIndex = contentType.lastIndexOf("=");
    String boundary = contentType.substring(lastIndex + 1,contentType.length());
    int pos;
    pos = file.indexOf("filename=\"");
    pos = file.indexOf("\n", pos) + 1;
    pos = file.indexOf("\n", pos) + 1;
    pos = file.indexOf("\n", pos) + 1;
    int boundaryLocation = file.indexOf(boundary, pos) - 4;
    int startPos = ((file.substring(0, pos)).getBytes()).length;
    int endPos = ((file.substring(0, boundaryLocation)).getBytes()).length;
    sf = "../" + File.separator + saveFile;
    FileOutputStream fileOut = new FileOutputStream(sf);
    fileOut.write(dataBytes, startPos, (endPos - startPos));  //----- Exception occurs on this line.
    fileOut.flush();
    fileOut.close();
Stacktrace:-
java.lang.IndexOutOfBoundsException
at java.io.FileOutputStream.writeBytes(Native Method)
at java.io.FileOutputStream.write(FileOutputStream.java:297)
at com.apprika.servlets.UpgradePatchServlet.uploadFile(UpgradePatchServlet.java:77)
at com.apprika.servlets.UpgradePatchServlet.upgradeServer(UpgradePatchServlet.java:40)
at com.apprika.servlets.UpgradePatchServlet.doPost(UpgradePatchServlet.java:30)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:849)
at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)
at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:454)
at java.lang.Thread.run(Thread.java:636)
Server is running on Linux and uploading file from Windows.
I've tried apache commons file upload but still not getting any success.
    try {
                 DiskFileItemFactory factory = new DiskFileItemFactory();
                 ServletFileUpload upload = new ServletFileUpload(factory);
                 List<FileItem> items = upload.parseRequest(req);
                 for (FileItem item : items) {
                    if (!item.isFormField()) {
                        InputStream is = item.getInputStream();
                        FileOutputStream os = new FileOutputStream("/up/" + item.getName());
                        byte[] b = new byte[4096];
                        int bytesRead = 0;
                        while ((bytesRead = is.read(b)) != -1) {
                            os.write(b, 0, bytesRead);
                        }
                        os.flush();
                        os.close();
                        is.close();
                    }
                 }
            }catch (Exception e) {
                e.printStackTrace();
            }
Now it gives error java.io.FileNotFoundException: /up (Is a directory)
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