I know this is rather late, but for anyone still looking for a way to do this, i have gathered a lot of information here on StackOverFlow etc., and have manage to put a script together which solves the problem for me.
The script actually even handles feature branches and tags - renaming them in the new project so you know where they came from.
I know this is rather late, but for anyone still looking for a way to do this, i have gathered a lot of information here on StackOverFlow etc., and have manage to put a script together which solves the problem for me.
The script actually even handles feature branches and tags - renaming them in the new project so you know where they came from.
#!/bin/bash
#
################################################################################
## Script to merge multiple git repositories into a new repository
## - The new repository will contain a folder for every merged repository
## - The script adds remotes for every project and then merges in every branch
##   and tag. These are renamed to have the origin project name as a prefix
##
## Usage: mergeGitRepositories.sh <new_project> <my_repo_urls.lst>
## - where <new_project> is the name of the new project to create
## - and <my_repo_urls.lst> is a file contaning the URLs to the respositories
##   which are to be merged on separate lines.
##
## Author: Robert von Burg
##            eitch@eitchnet.ch
##
## Version: 0.2.0
## Created: 2015-06-17
##
################################################################################
#
# disallow using undefined variables
shopt -s -o nounset
# Script variables
declare SCRIPT_NAME="${0##*/}"
declare SCRIPT_DIR="$(cd ${0%/*} ; pwd)"
declare ROOT_DIR="$PWD"
# Detect proper usage
if [ "$#" -ne "2" ] ; then
  echo -e "ERROR: Usage: $0 <new_project> <my_repo_urls.lst>"
  exit 1
fi >&2
# Script functions
function failed() {
  echo -e "ERROR: Merging of projects failed:"
  echo -e "$1"
  exit 1
} >&2
function commit_merge() {
  current_branch="$(git symbolic-ref HEAD 2>/dev/null)"
  CHANGES=$(git status | grep "working directory clean")
  MERGING=$(git status | grep "merging")
  if [[ "$CHANGES" != "" ]] && [[ "$MERGING" == "" ]] ; then
    echo -e "INFO:   No commit required."
  else
    echo -e "INFO:   Committing ${sub_project}..."
    if ! git commit --quiet -m "[Project] Merged branch '$1' of ${sub_project}" ; then
      failed "Failed to commit merge of branch '$1' of ${sub_project} into ${current_branch}"
    fi
  fi
}
## Script variables
PROJECT_NAME="${1}"
PROJECT_PATH="${ROOT_DIR}/${PROJECT_NAME}"
REPO_FILE="${2}"
REPO_URL_FILE="${ROOT_DIR}/${REPO_FILE}"
# Make sure the REPO_URL_FILE exists
if [ ! -e "${REPO_URL_FILE}" ] ; then
  echo -e "ERROR: Repo file ${REPO_URL_FILE} does not exist!"
  exit 1
fi >&2
# Make sure the required directories don't exist
if [ -e "${PROJECT_PATH}" ] ; then
  echo -e "ERROR: Project ${PROJECT_NAME} already exists!"
  exit 1
fi >&2
# create the new project
echo -e "INFO: Creating new git repository ${PROJECT_NAME}..."
echo -e "===================================================="
cd ${ROOT_DIR}
mkdir ${PROJECT_NAME}
cd ${PROJECT_NAME}
git init
echo "Initial Commit" > initial_commit
# Since this is a new repository we need to have at least one commit
# thus were we create temporary file, but we delete it again.
# Deleting it guarantees we don't have conflicts later when merging
git add initial_commit
git commit --quiet -m "[Project] Initial Master Repo Commit"
git rm --quiet initial_commit
git commit --quiet -m "[Project] Initial Master Repo Commit"
echo
# Merge all projects into th branches of this project
echo -e "INFO: Merging projects into new repository..."
echo -e "===================================================="
for url in $(cat ${REPO_URL_FILE}) ; do
  # extract the name of this project
  export sub_project=${url##*/}
  sub_project=${sub_project%*.git}
  echo -e "INFO: Project ${sub_project}"
  echo -e "----------------------------------------------------"
  # Fetch the project
  echo -e "INFO:   Fetching ${sub_project}..."
  git remote add "${sub_project}" "${url}"
  if ! git fetch --no-tags --quiet ${sub_project} 2>/dev/null ; then
    failed "Failed to fetch project ${sub_project}"
  fi
  # add remote branches
  echo -e "INFO:   Creating local branches for ${sub_project}..."
  while read branch ; do 
    branch_ref=$(echo $branch | tr " " "\t" | cut -f 1)
    branch_name=$(echo $branch | tr " " "\t" | cut -f 2 | cut -d / -f 3-)
    echo -e "INFO:   Creating branch ${branch_name}..."
    # create and checkout new merge branch off of master
    git checkout --quiet -b "${sub_project}/${branch_name}" master
    git reset --hard --quiet
    git clean -d --force --quiet
    # Merge the project
    echo -e "INFO:   Merging ${sub_project}..."
    if ! git merge --quiet --no-commit "remotes/${sub_project}/${branch_name}" 2>/dev/null ; then
      failed "Failed to merge branch 'remotes/${sub_project}/${branch_name}' from ${sub_project}"
    fi
    # And now see if we need to commit (maybe there was a merge)
    commit_merge "${sub_project}/${branch_name}"
    # relocate projects files into own directory
    if [ "$(ls)" == "${sub_project}" ] ; then
      echo -e "WARN:   Not moving files in branch ${branch_name} of ${sub_project} as already only one root level."
    else
      echo -e "INFO:   Moving files in branch ${branch_name} of ${sub_project} so we have a single directory..."
      mkdir ${sub_project}
      for f in $(ls -a) ; do
        if  [[ "$f" == "${sub_project}" ]] || 
            [[ "$f" == "." ]] || 
            [[ "$f" == ".." ]] ; then 
          continue
        fi
        git mv -k "$f" "${sub_project}/"
      done
      # commit the moving
      if ! git commit --quiet -m  "[Project] Move ${sub_project} files into sub directory" ; then
        failed "Failed to commit moving of ${sub_project} files into sub directory"
      fi
    fi
    echo
  done < <(git ls-remote --heads ${sub_project})
  # checkout master of sub probject
  if ! git checkout "${sub_project}/master" 2>/dev/null ; then
    failed "sub_project ${sub_project} is missing master branch!"
  fi
  # copy remote tags
  echo -e "INFO:   Copying tags for ${sub_project}..."
  while read tag ; do 
    tag_ref=$(echo $tag | tr " " "\t" | cut -f 1)
    tag_name=$(echo $tag | tr " " "\t" | cut -f 2 | cut -d / -f 3)
    # hack for broken tag names where they are like 1.2.0^{} instead of just 1.2.0
    tag_name="${tag_name%%^*}"
    tag_new_name="${sub_project}/${tag_name}"
    echo -e "INFO:     Copying tag ${tag_name} to ${tag_new_name} for ref ${tag_ref}..."
    if ! git tag "${tag_new_name}" "${tag_ref}" 2>/dev/null ; then
      echo -e "WARN:     Could not copy tag ${tag_name} to ${tag_new_name} for ref ${tag_ref}"
    fi
  done < <(git ls-remote --tags ${sub_project})
  # Remove the remote to the old project
  echo -e "INFO:   Removing remote ${sub_project}..."
  git remote rm ${sub_project}
  echo
done
# Now merge all project master branches into new master
git checkout --quiet master
echo -e "INFO: Merging projects master branches into new repository..."
echo -e "===================================================="
for url in $(cat ${REPO_URL_FILE}) ; do
  # extract the name of this project
  export sub_project=${url##*/}
  sub_project=${sub_project%*.git}
  echo -e "INFO:   Merging ${sub_project}..."
  if ! git merge --quiet --no-commit "${sub_project}/master" 2>/dev/null ; then
    failed "Failed to merge branch ${sub_project}/master into master"
  fi
  # And now see if we need to commit (maybe there was a merge)
  commit_merge "${sub_project}/master"
  echo
done
# Done
cd ${ROOT_DIR}
echo -e "INFO: Done."
echo
exit 0
You can also get it from http://paste.ubuntu.com/11732805/
First create a file with the URL to each repository, e.g.: 
  git@github.com:eitchnet/ch.eitchnet.parent.git
  git@github.com:eitchnet/ch.eitchnet.utils.git
  git@github.com:eitchnet/ch.eitchnet.privilege.git
Then call the script giving a name of the project and the path to the script:
  ./mergeGitRepositories.sh eitchnet_test eitchnet.lst
The script itself has a lot of comments which should explain what it does.
Edited to replace the script with a more superior one.